FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1823, 365 aa
  1>>>pF1KSDA1823 365 - 365 aa - 365 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4110+/-0.000828; mu= 13.0888+/- 0.050
 mean_var=111.2634+/-22.237, 0's: 0 Z-trim(110.1): 30  B-trim: 0 in 0/53
 Lambda= 0.121590
 statistics sampled from 11301 (11326) to 11301 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.348), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS14639.1 PHF6 gene_id:84295|Hs108|chrX          ( 365) 2512 451.1  7e-127
CCDS14640.1 PHF6 gene_id:84295|Hs108|chrX          ( 312) 1909 345.3 4.3e-95
CCDS41887.1 PHF11 gene_id:51131|Hs108|chr13        ( 292)  311 64.9 9.9e-11


>>CCDS14639.1 PHF6 gene_id:84295|Hs108|chrX               (365 aa)
 initn: 2512 init1: 2512 opt: 2512  Z-score: 2391.4  bits: 451.1 E(32554): 7e-127
Smith-Waterman score: 2512; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)

               10        20        30        40        50        60
pF1KSD MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD STSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 STSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAHY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD YHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGKVEIDQQQLTQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGKVEIDQQQLTQQ
              310       320       330       340       350       360

            
pF1KSD QLNGN
       :::::
CCDS14 QLNGN
            

>>CCDS14640.1 PHF6 gene_id:84295|Hs108|chrX               (312 aa)
 initn: 1908 init1: 984 opt: 1909  Z-score: 1820.7  bits: 345.3 E(32554): 4.3e-95
Smith-Waterman score: 1909; 95.6% identity (96.3% similar) in 295 aa overlap (1-292:1-295)

               10        20        30        40        50        60
pF1KSD MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS
               70        80        90       100       110       120

              130       140        150       160       170         
pF1KSD QGIYMVYCRKHKKTAHNSEA-DLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDT
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS14 QGIYMVYCRKHKKTAHNSEAADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDT
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KSD RSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAH
              190       200       210       220       230       240

     240       250       260       270       280         290       
pF1KSD YKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCT--LCSQPGATIGCEIKAC
       ::::::::::::::::::::::::::::::::::::::: :.  .:      : :     
CCDS14 YKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMVCSFYICYATLHLICCFKFRV
              250       260       270       280       290       300

       300       310       320       330       340       350       
pF1KSD VKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGKVEIDQQQL
                                                                   
CCDS14 HPKFIQSSENLK                                                
              310                                                  

>>CCDS41887.1 PHF11 gene_id:51131|Hs108|chr13             (292 aa)
 initn: 376 init1: 258 opt: 311  Z-score: 306.2  bits: 64.9 E(32554): 9.9e-11
Smith-Waterman score: 348; 39.8% identity (74.8% similar) in 123 aa overlap (14-133:3-122)

               10        20        30        40        50        60
pF1KSD MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
                    .: :..:   .: : . : .......:::..:.:.::.::  . :..
CCDS41            MEKRTCALCP--KDVEYNVLYFAQSENIAAHENCLLYSSGLVECE-DQD
                          10          20        30        40       

                  70        80        90       100       110       
pF1KSD SLG---GFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIRE
        :.   .:..:.:.:::.:: :: :..::  :::.:::.:.:...::. :: .: :  . 
CCDS41 PLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQS
         50        60        70        80        90       100      

       120       130       140       150       160       170       
pF1KSD KPSQGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSE
          .::: . :..: .                                            
CCDS41 DGVRGIYKLLCQQHAQFPIIAQSAKFSGVKRKRGRKKPLSGNHVQPPETMKCNTFIRQVK
        110       120       130       140       150       160      




365 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:26:48 2016 done: Thu Nov  3 07:26:49 2016
 Total Scan time:  2.920 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]