FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1835, 587 aa
  1>>>pF1KSDA1835 587 - 587 aa - 587 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3904+/-0.00127; mu= -2.6335+/- 0.078
 mean_var=341.0513+/-68.656, 0's: 0 Z-trim(111.9): 40  B-trim: 328 in 1/52
 Lambda= 0.069449
 statistics sampled from 12765 (12792) to 12765 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.393), width:  16
 Scan time:  4.350

The best scores are:                                      opt bits E(32554)
CCDS14012.1 RANGAP1 gene_id:5905|Hs108|chr22       ( 587) 3715 386.4 5.3e-107


>>CCDS14012.1 RANGAP1 gene_id:5905|Hs108|chr22            (587 aa)
 initn: 3715 init1: 3715 opt: 3715  Z-score: 2034.5  bits: 386.4 E(32554): 5.3e-107
Smith-Waterman score: 3715; 100.0% identity (100.0% similar) in 587 aa overlap (1-587:1-587)

               10        20        30        40        50        60
pF1KSD MASEDIAKLAETLAKTQVAGGQLSFKGKSLKLNTAEDAKDVIKEIEDFDSLEALRLEGNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MASEDIAKLAETLAKTQVAGGQLSFKGKSLKLNTAEDAKDVIKEIEDFDSLEALRLEGNT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VGVEAARVIAKALEKKSELKRCHWSDMFTGRLRTEIPPALISLGEGLITAGAQLVELDLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VGVEAARVIAKALEKKSELKRCHWSDMFTGRLRTEIPPALISLGEGLITAGAQLVELDLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DNAFGPDGVQGFEALLKSSACFTLQELKLNNCGMGIGGGKILAAALTECHRKSSAQGKPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DNAFGPDGVQGFEALLKSSACFTLQELKLNNCGMGIGGGKILAAALTECHRKSSAQGKPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD ALKVFVAGRNRLENDGATALAEAFRVIGTLEEVHMPQNGINHPGITALAQAFAVNPLLRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ALKVFVAGRNRLENDGATALAEAFRVIGTLEEVHMPQNGINHPGITALAQAFAVNPLLRV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD INLNDNTFTEKGAVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADAIRGGLPKLKELNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 INLNDNTFTEKGAVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADAIRGGLPKLKELNL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SFCEIKRDAALAVAEAMADKAELEKLDLNGNTLGEEGCEQLQEVLEGFNMAKVLASLSDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SFCEIKRDAALAVAEAMADKAELEKLDLNGNTLGEEGCEQLQEVLEGFNMAKVLASLSDD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD EDEEEEEEGEEEEEEAEEEEEEDEEEEEEEEEEEEEEPQQRGQGEKSATPSRKILDPNTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EDEEEEEEGEEEEEEAEEEEEEDEEEEEEEEEEEEEEPQQRGQGEKSATPSRKILDPNTG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD EPAPVLSSPPPADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVSAFLKVSSVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EPAPVLSSPPPADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVSAFLKVSSVF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD KDEATVRMAVQDAVDALMQKAFNSSSFNSNTFLTRLLVHMGLLKSEDKVKAIANLYGPLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KDEATVRMAVQDAVDALMQKAFNSSSFNSNTFLTRLLVHMGLLKSEDKVKAIANLYGPLM
              490       500       510       520       530       540

              550       560       570       580       
pF1KSD ALNHMVQQDYFPKALAPLLLAFVTKPNSALESCSFARHSLLQTLYKV
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ALNHMVQQDYFPKALAPLLLAFVTKPNSALESCSFARHSLLQTLYKV
              550       560       570       580       




587 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:28:40 2016 done: Thu Nov  3 07:28:41 2016
 Total Scan time:  4.350 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]