Result of FASTA (ccds) for
pF1KSDA1882
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1882, 1148 aa
1>>>pF1KSDA1882 1148 - 1148 aa - 1148 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9150+/-0.000947; mu= 18.8686+/- 0.057
mean_var=70.1530+/-13.774, 0's: 0 Z-trim(104.7): 21 B-trim: 0 in 0/50
Lambda= 0.153127
statistics sampled from 8052 (8056) to 8052 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.247), width: 16
Scan time: 3.830
The best scores are: opt bits E(32554)
CCDS55278.1 TRAPPC9 gene_id:83696|Hs108|chr8 (1148) 7665 1703.1 0
CCDS34946.1 TRAPPC9 gene_id:83696|Hs108|chr8 (1246) 7665 1703.1 0
>>CCDS55278.1 TRAPPC9 gene_id:83696|Hs108|chr8 (1148 aa)
initn: 7665 init1: 7665 opt: 7665 Z-score: 9140.0 bits: 1703.1 E(32554): 0
Smith-Waterman score: 7665; 100.0% identity (100.0% similar) in 1148 aa overlap (1-1148:1-1148)
10 20 30 40 50 60
pF1KSD MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH
1090 1100 1110 1120 1130 1140
pF1KSD VCALEAQA
::::::::
CCDS55 VCALEAQA
>>CCDS34946.1 TRAPPC9 gene_id:83696|Hs108|chr8 (1246 aa)
initn: 7665 init1: 7665 opt: 7665 Z-score: 9139.5 bits: 1703.1 E(32554): 0
Smith-Waterman score: 7665; 100.0% identity (100.0% similar) in 1148 aa overlap (1-1148:99-1246)
10 20 30
pF1KSD MSVPDYMQCAEDHQTLLVVVQPVGIVSEEN
::::::::::::::::::::::::::::::
CCDS34 PQWASAGPPPLSFTEEVKFELRALKDWDFKMSVPDYMQCAEDHQTLLVVVQPVGIVSEEN
70 80 90 100 110 120
40 50 60 70 80 90
pF1KSD FFRIYKRICSVSQISVRDSQRVLYIRYRHHYPPENNEWGDFQTHRKVVGLITITDCFSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FFRIYKRICSVSQISVRDSQRVLYIRYRHHYPPENNEWGDFQTHRKVVGLITITDCFSAK
130 140 150 160 170 180
100 110 120 130 140 150
pF1KSD DWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGEIVEQPRTDVAFYPNYEDCQTVEKRIED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGEIVEQPRTDVAFYPNYEDCQTVEKRIED
190 200 210 220 230 240
160 170 180 190 200 210
pF1KSD FIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVG
250 260 270 280 290 300
220 230 240 250 260 270
pF1KSD DLCLQAGMLQDSLVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGTGGKSGARR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DLCLQAGMLQDSLVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGTGGKSGARR
310 320 330 340 350 360
280 290 300 310 320 330
pF1KSD FQGSTLPAEAANRHRPGAQEVLIDPGALTTNGINPDTSTEIGRAKNCLSPEDIIDKYKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FQGSTLPAEAANRHRPGAQEVLIDPGALTTNGINPDTSTEIGRAKNCLSPEDIIDKYKEA
370 380 390 400 410 420
340 350 360 370 380 390
pF1KSD ISYYSKYKNAGVIELEACIKAVRVLAIQKRSMEASEFLQNAVYINLRQLSEEEKIQRYSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ISYYSKYKNAGVIELEACIKAVRVLAIQKRSMEASEFLQNAVYINLRQLSEEEKIQRYSI
430 440 450 460 470 480
400 410 420 430 440 450
pF1KSD LSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLSLDPKDFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLSLDPKDFSR
490 500 510 520 530 540
460 470 480 490 500 510
pF1KSD GTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVAQSLENY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVAQSLENY
550 560 570 580 590 600
520 530 540 550 560 570
pF1KSD TSKCPGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMKSLLGQNVSTKSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TSKCPGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMKSLLGQNVSTKSP
610 620 630 640 650 660
580 590 600 610 620 630
pF1KSD FIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESL
670 680 690 700 710 720
640 650 660 670 680 690
pF1KSD PAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTVEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTVEV
730 740 750 760 770 780
700 710 720 730 740 750
pF1KSD IPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLE
790 800 810 820 830 840
760 770 780 790 800 810
pF1KSD VTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKVKLDFSCQENLLQDLSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKVKLDFSCQENLLQDLSD
850 860 870 880 890 900
820 830 840 850 860 870
pF1KSD DGISVSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVKTLEAVLNFKYSGGPGHTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DGISVSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVKTLEAVLNFKYSGGPGHTE
910 920 930 940 950 960
880 890 900 910 920 930
pF1KSD GYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTVSTRSSEALIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTVSTRSSEALIL
970 980 990 1000 1010 1020
940 950 960 970 980 990
pF1KSD HAGECQRMAIQVDKFNFESFPESPGEKGQFANPKQLEEERREARGLEIHSKLGICWRIPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HAGECQRMAIQVDKFNFESFPESPGEKGQFANPKQLEEERREARGLEIHSKLGICWRIPS
1030 1040 1050 1060 1070 1080
1000 1010 1020 1030 1040 1050
pF1KSD LKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDREAVAACQVGDPVRLEVRLTNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDREAVAACQVGDPVRLEVRLTNR
1090 1100 1110 1120 1130 1140
1060 1070 1080 1090 1100 1110
pF1KSD SPRSVGPFALTVVPFQDHQNGVHNYDLHDTVSFVGSSTFYLDAVQPSGQSACLGALLFLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SPRSVGPFALTVVPFQDHQNGVHNYDLHDTVSFVGSSTFYLDAVQPSGQSACLGALLFLY
1150 1160 1170 1180 1190 1200
1120 1130 1140
pF1KSD TGDFFLHIRFHEDSTSKELPPSWFCLPSVHVCALEAQA
::::::::::::::::::::::::::::::::::::::
CCDS34 TGDFFLHIRFHEDSTSKELPPSWFCLPSVHVCALEAQA
1210 1220 1230 1240
1148 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 07:35:47 2016 done: Thu Nov 3 07:35:48 2016
Total Scan time: 3.830 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]