Result of FASTA (ccds) for
pF1KSDA1899
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1899, 1024 aa
1>>>pF1KSDA1899 1024 - 1024 aa - 1024 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3414+/-0.00118; mu= 16.0127+/- 0.071
mean_var=84.5484+/-16.421, 0's: 0 Z-trim(102.3): 18 B-trim: 0 in 0/50
Lambda= 0.139483
statistics sampled from 6886 (6893) to 6886 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.565), E-opt: 0.2 (0.212), width: 16
Scan time: 4.450
The best scores are: opt bits E(32554)
CCDS73698.1 TUBGCP5 gene_id:114791|Hs108|chr15 (1024) 6828 1385.0 0
CCDS73697.1 TUBGCP5 gene_id:114791|Hs108|chr15 (1024) 6750 1369.3 0
>>CCDS73698.1 TUBGCP5 gene_id:114791|Hs108|chr15 (1024 aa)
initn: 6828 init1: 6828 opt: 6828 Z-score: 7422.6 bits: 1385.0 E(32554): 0
Smith-Waterman score: 6828; 100.0% identity (100.0% similar) in 1024 aa overlap (1-1024:1-1024)
10 20 30 40 50 60
pF1KSD MARHGPPWSRLDAQQERDVRELVRGVAGLQDEADPNFQLALNFAWSNFRFHRFLDVNSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MARHGPPWSRLDAQQERDVRELVRGVAGLQDEADPNFQLALNFAWSNFRFHRFLDVNSHK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IEKTIEGIYEKFVIHSDLSKAASWKRLTEEFLNAPLPSIKEIKTDAHYSILSLLLCLSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IEKTIEGIYEKFVIHSDLSKAASWKRLTEEFLNAPLPSIKEIKTDAHYSILSLLLCLSDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PSNSSYVETPRNKEVEKKDDFDWGKYLMEDEEMDIGPYMDTPNWSEESEEENDQQPLSRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSNSSYVETPRNKEVEKKDDFDWGKYLMEDEEMDIGPYMDTPNWSEESEEENDQQPLSRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD DSGIQVDRTPLEEQDQNRKLDPCISWKDEPDDRSWLEHHVVHQYWTARPSQFPHSLHLHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DSGIQVDRTPLEEQDQNRKLDPCISWKDEPDDRSWLEHHVVHQYWTARPSQFPHSLHLHS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD NLAAVWDQHLYSSDPLYVPDDRVLVTETQVIRETLWLLSGVKKLFIFQLIDGKVTVRNNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NLAAVWDQHLYSSDPLYVPDDRVLVTETQVIRETLWLLSGVKKLFIFQLIDGKVTVRNNI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IVTHLTHSCLRSVLEQIAAYGQVVFRLQEFIDEVMGHSSESMLPGSGSVPKKSTEAPFRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IVTHLTHSCLRSVLEQIAAYGQVVFRLQEFIDEVMGHSSESMLPGSGSVPKKSTEAPFRT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD YQAFMWALYKYFISFKEELAEIEKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YQAFMWALYKYFISFKEELAEIEKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD AEVPPDTRNVVRASHLLNTLYKAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AEVPPDTRNVVRASHLLNTLYKAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD VHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYSVSEKTENEEKMSDNASASSGSDQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYSVSEKTENEEKMSDNASASSGSDQG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD PSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNLQCAESTTCQAGARDAERKSLYTLFLESV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNLQCAESTTCQAGARDAERKSLYTLFLESV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD QSRLRHGEDSTPQVLTEQQATKENLMKMQSIAESHLELDDVHDPLLAINFARMYLEQSDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QSRLRHGEDSTPQVLTEQQATKENLMKMQSIAESHLELDDVHDPLLAINFARMYLEQSDF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD HEKFAGGDVCVDRSSESVTCQTFELTLRSCLYPHIDKQYLDCCGNLMQTLKKDYRLVEYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HEKFAGGDVCVDRSSESVTCQTFELTLRSCLYPHIDKQYLDCCGNLMQTLKKDYRLVEYL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD QAMRNFFLMEGGDTMYDFYTSIFDKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QAMRNFFLMEGGDTMYDFYTSIFDKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSIS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD FENVDTAKKKLPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FENVDTAKKKLPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSLDV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD LLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLHNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLHNY
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD IMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLREKVSFVKEAIMKVLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLREKVSFVKEAIMKVLNL
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD ALMFADGWQAGLGTWRMESIEKMESDFKNCHMFLVTILNKAVCRGSFPHLESLALSLMAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ALMFADGWQAGLGTWRMESIEKMESDFKNCHMFLVTILNKAVCRGSFPHLESLALSLMAG
970 980 990 1000 1010 1020
pF1KSD MEQS
::::
CCDS73 MEQS
>>CCDS73697.1 TUBGCP5 gene_id:114791|Hs108|chr15 (1024 aa)
initn: 6782 init1: 6750 opt: 6750 Z-score: 7337.8 bits: 1369.3 E(32554): 0
Smith-Waterman score: 6750; 99.6% identity (99.7% similar) in 1015 aa overlap (1-1015:1-1015)
10 20 30 40 50 60
pF1KSD MARHGPPWSRLDAQQERDVRELVRGVAGLQDEADPNFQLALNFAWSNFRFHRFLDVNSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MARHGPPWSRLDAQQERDVRELVRGVAGLQDEADPNFQLALNFAWSNFRFHRFLDVNSHK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IEKTIEGIYEKFVIHSDLSKAASWKRLTEEFLNAPLPSIKEIKTDAHYSILSLLLCLSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IEKTIEGIYEKFVIHSDLSKAASWKRLTEEFLNAPLPSIKEIKTDAHYSILSLLLCLSDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PSNSSYVETPRNKEVEKKDDFDWGKYLMEDEEMDIGPYMDTPNWSEESEEENDQQPLSRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSNSSYVETPRNKEVEKKDDFDWGKYLMEDEEMDIGPYMDTPNWSEESEEENDQQPLSRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD DSGIQVDRTPLEEQDQNRKLDPCISWKDEPDDRSWLEHHVVHQYWTARPSQFPHSLHLHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DSGIQVDRTPLEEQDQNRKLDPCISWKDEPDDRSWLEHHVVHQYWTARPSQFPHSLHLHS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD NLAAVWDQHLYSSDPLYVPDDRVLVTETQVIRETLWLLSGVKKLFIFQLIDGKVTVRNNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NLAAVWDQHLYSSDPLYVPDDRVLVTETQVIRETLWLLSGVKKLFIFQLIDGKVTVRNNI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IVTHLTHSCLRSVLEQIAAYGQVVFRLQEFIDEVMGHSSESMLPGSGSVPKKSTEAPFRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IVTHLTHSCLRSVLEQIAAYGQVVFRLQEFIDEVMGHSSESMLPGSGSVPKKSTEAPFRT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD YQAFMWALYKYFISFKEELAEIEKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YQAFMWALYKYFISFKEELAEIEKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD AEVPPDTRNVVRASHLLNTLYKAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AEVPPDTRNVVRASHLLNTLYKAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD VHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYSVSEKTENEEKMSDNASASSGSDQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYSVSEKTENEEKMSDNASASSGSDQG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD PSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNLQCAESTTCQAGARDAERKSLYTLFLESV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNLQCAESTTCQAGARDAERKSLYTLFLESV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD QSRLRHGEDSTPQVLTEQQATKENLMKMQSIAESHLELDDVHDPLLAINFARMYLEQSDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QSRLRHGEDSTPQVLTEQQATKENLMKMQSIAESHLELDDVHDPLLAINFARMYLEQSDF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD HEKFAGGDVCVDRSSESVTCQTFELTLRSCLYPHIDKQYLDCCGNLMQTLKKDYRLVEYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HEKFAGGDVCVDRSSESVTCQTFELTLRSCLYPHIDKQYLDCCGNLMQTLKKDYRLVEYL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD QAMRNFFLMEGGDTMYDFYTSIFDKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QAMRNFFLMEGGDTMYDFYTSIFDKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSIS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD FENVDTAKKKLPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FENVDTAKKKLPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSLDV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD LLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLHNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLHNY
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD IMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLREKVSFVKEAIMKVLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLREKVSFVKEAIMKVLNL
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD ALMFADGWQAGLGTWRMESIEKMESDFKNCHMFLVTILNKAVCRGSFPHLESLALSLMAG
::::::::::::::::::::::::::::::::::::::::::::::::: : . :
CCDS73 ALMFADGWQAGLGTWRMESIEKMESDFKNCHMFLVTILNKAVCRGSFPHCEYIMLKYFYL
970 980 990 1000 1010 1020
pF1KSD MEQS
CCDS73 CISL
1024 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 07:40:31 2016 done: Thu Nov 3 07:40:32 2016
Total Scan time: 4.450 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]