Result of FASTA (omim) for
pF1KSDA1934
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1934, 448 aa
1>>>pF1KSDA1934 448 - 448 aa - 448 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9848+/-0.000316; mu= 15.8394+/- 0.020
mean_var=104.5270+/-20.545, 0's: 0 Z-trim(118.5): 33 B-trim: 1746 in 1/54
Lambda= 0.125447
statistics sampled from 31393 (31428) to 31393 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.368), width: 16
Scan time: 9.860
The best scores are: opt bits E(85289)
NP_001096621 (OMIM: 300916) paraneoplastic antigen ( 448) 2996 552.6 7.5e-157
NP_443158 (OMIM: 300916) paraneoplastic antigen-li ( 448) 2996 552.6 7.5e-157
NP_001171853 (OMIM: 300916) paraneoplastic antigen ( 448) 2996 552.6 7.5e-157
XP_016884741 (OMIM: 300916) PREDICTED: paraneoplas ( 448) 2996 552.6 7.5e-157
NP_001096620 (OMIM: 300916) paraneoplastic antigen ( 448) 2996 552.6 7.5e-157
XP_016884742 (OMIM: 300916) PREDICTED: paraneoplas ( 448) 2996 552.6 7.5e-157
NP_001269464 (OMIM: 300675) paraneoplastic antigen ( 455) 1135 215.8 1.9e-55
NP_037496 (OMIM: 300675) paraneoplastic antigen Ma ( 463) 1135 215.8 1.9e-55
NP_006020 (OMIM: 604010) paraneoplastic antigen Ma ( 353) 1072 204.3 4.2e-52
XP_011542667 (OMIM: 603970) PREDICTED: paraneoplas ( 364) 1047 199.8 9.8e-51
NP_009188 (OMIM: 603970) paraneoplastic antigen Ma ( 364) 1047 199.8 9.8e-51
NP_071434 (OMIM: 609485) modulator of apoptosis 1 ( 351) 1033 197.3 5.5e-50
NP_116271 (OMIM: 300917) paraneoplastic antigen-li ( 399) 923 177.4 6e-44
NP_776159 (OMIM: 300701) zinc finger CCHC domain-c ( 402) 489 98.9 2.7e-20
NP_001299820 (OMIM: 300701) zinc finger CCHC domai ( 402) 489 98.9 2.7e-20
>>NP_001096621 (OMIM: 300916) paraneoplastic antigen-lik (448 aa)
initn: 2996 init1: 2996 opt: 2996 Z-score: 2937.0 bits: 552.6 E(85289): 7.5e-157
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448)
10 20 30 40 50 60
pF1KSD MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFGDKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFGDKED
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD FRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ALRGKLELLDQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQARAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALRGKLELLDQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQARAEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAENQTPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAENQTPG
370 380 390 400 410 420
430 440
pF1KSD REGPQAAGEELGNEAGAGAMSHPKPWET
::::::::::::::::::::::::::::
NP_001 REGPQAAGEELGNEAGAGAMSHPKPWET
430 440
>>NP_443158 (OMIM: 300916) paraneoplastic antigen-like p (448 aa)
initn: 2996 init1: 2996 opt: 2996 Z-score: 2937.0 bits: 552.6 E(85289): 7.5e-157
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448)
10 20 30 40 50 60
pF1KSD MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 ARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFGDKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 QVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFGDKED
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD FRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 FRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ALRGKLELLDQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQARAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 ALRGKLELLDQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQARAEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAENQTPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 SVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAENQTPG
370 380 390 400 410 420
430 440
pF1KSD REGPQAAGEELGNEAGAGAMSHPKPWET
::::::::::::::::::::::::::::
NP_443 REGPQAAGEELGNEAGAGAMSHPKPWET
430 440
>>NP_001171853 (OMIM: 300916) paraneoplastic antigen-lik (448 aa)
initn: 2996 init1: 2996 opt: 2996 Z-score: 2937.0 bits: 552.6 E(85289): 7.5e-157
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448)
10 20 30 40 50 60
pF1KSD MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFGDKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFGDKED
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD FRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ALRGKLELLDQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQARAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALRGKLELLDQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQARAEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAENQTPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAENQTPG
370 380 390 400 410 420
430 440
pF1KSD REGPQAAGEELGNEAGAGAMSHPKPWET
::::::::::::::::::::::::::::
NP_001 REGPQAAGEELGNEAGAGAMSHPKPWET
430 440
>>XP_016884741 (OMIM: 300916) PREDICTED: paraneoplastic (448 aa)
initn: 2996 init1: 2996 opt: 2996 Z-score: 2937.0 bits: 552.6 E(85289): 7.5e-157
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448)
10 20 30 40 50 60
pF1KSD MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFGDKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFGDKED
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD FRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ALRGKLELLDQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQARAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALRGKLELLDQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQARAEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAENQTPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAENQTPG
370 380 390 400 410 420
430 440
pF1KSD REGPQAAGEELGNEAGAGAMSHPKPWET
::::::::::::::::::::::::::::
XP_016 REGPQAAGEELGNEAGAGAMSHPKPWET
430 440
>>NP_001096620 (OMIM: 300916) paraneoplastic antigen-lik (448 aa)
initn: 2996 init1: 2996 opt: 2996 Z-score: 2937.0 bits: 552.6 E(85289): 7.5e-157
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448)
10 20 30 40 50 60
pF1KSD MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFGDKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFGDKED
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD FRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ALRGKLELLDQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQARAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALRGKLELLDQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQARAEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAENQTPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAENQTPG
370 380 390 400 410 420
430 440
pF1KSD REGPQAAGEELGNEAGAGAMSHPKPWET
::::::::::::::::::::::::::::
NP_001 REGPQAAGEELGNEAGAGAMSHPKPWET
430 440
>>XP_016884742 (OMIM: 300916) PREDICTED: paraneoplastic (448 aa)
initn: 2996 init1: 2996 opt: 2996 Z-score: 2937.0 bits: 552.6 E(85289): 7.5e-157
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448)
10 20 30 40 50 60
pF1KSD MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARALGCCSLPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFGDKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFGDKED
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD FRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ALRGKLELLDQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQARAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALRGKLELLDQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQARAEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAENQTPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAENQTPG
370 380 390 400 410 420
430 440
pF1KSD REGPQAAGEELGNEAGAGAMSHPKPWET
::::::::::::::::::::::::::::
XP_016 REGPQAAGEELGNEAGAGAMSHPKPWET
430 440
>>NP_001269464 (OMIM: 300675) paraneoplastic antigen Ma3 (455 aa)
initn: 1126 init1: 611 opt: 1135 Z-score: 1116.6 bits: 215.8 E(85289): 1.9e-55
Smith-Waterman score: 1142; 45.3% identity (72.8% similar) in 408 aa overlap (1-403:1-395)
10 20 30 40 50 60
pF1KSD MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
: ::::.:::.: .. :. .::.::: .:.: :...:.. . . : :::.:::::::.
NP_001 MPLTLLQDWCRGEHLNTRRCMLILGIPEDCGEDEFEETLQEACRHLGRYRVIGRMFRREE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
::.:...:::. ..:. :: .:::::: :::.::::: : :::.::: ::..: :...:.
NP_001 NAQAILLELAQDIDYALLPREIPGKGGPWEVIVKPRNSDGEFLNRLNRFLEEERRTVSDM
70 80 90 100 110 120
130 140 150 160 170
pF1KSD ARALGC---CSLPAESLDAE--VMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETF
:.:: :: : ... : . :. . ..: :.: ::.:.::::.. :: .:
NP_001 NRVLGSDTNCSAPRVTISPEFWTWAQTLGAAVQPLLEQMLYRELRVFSGNTISIPGALAF
130 140 150 160 170 180
180 190 200 210 220 230
pF1KSD EDWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIF
. :::..::.. .::: : ::::::.: ::::::... :.:.: :::::.:: ::.:.:
NP_001 DAWLEHTTEMLQMWQVPEGEKRRRLMECLRGPALQVVSGLRASNASITVEECLAALQQVF
190 200 210 220 230 240
240 250 260 270 280 290
pF1KSD GDKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLAR
: :. . .: .. .. . :::::.:.::::::::.::... .: :.... :::..:.
NP_001 GPVESHKIAQVKLCKAYQEAGEKVSSFVLRLEPLLQRAVENNVVSRRNVNQTRLKRVLSG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KSD VAMTPALRGKLELLDQRGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQ
... :: ::.:. :: ::.:: :.::.:.::::: : . .. : .: .. :
NP_001 ATLPDKLRDKLKLMKQRRKPPGFLALVKLLREEEEWEATL----GPDRESLEGLEVAPRP
310 320 330 340 350
360 370 380 390 400 410
pF1KSD ARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAE
..:.: ... :: :. :. :: .::: : . ::
NP_001 PARITGVGAVPLPASGNSF-DARPS--QG-----YRRRRGRG-QHRRGGVARAGSRGSRK
360 370 380 390 400
420 430 440
pF1KSD NQTPGREGPQAAGEELGNEAGAGAMSHPKPWET
NP_001 RKRHTFCYSCGEDGHIRVQCINPSNLLLAKETKEILEGGEREAQTNSR
410 420 430 440 450
>>NP_037496 (OMIM: 300675) paraneoplastic antigen Ma3 is (463 aa)
initn: 1157 init1: 611 opt: 1135 Z-score: 1116.5 bits: 215.8 E(85289): 1.9e-55
Smith-Waterman score: 1152; 43.1% identity (68.3% similar) in 464 aa overlap (1-444:1-459)
10 20 30 40 50 60
pF1KSD MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
: ::::.:::.: .. :. .::.::: .:.: :...:.. . . : :::.:::::::.
NP_037 MPLTLLQDWCRGEHLNTRRCMLILGIPEDCGEDEFEETLQEACRHLGRYRVIGRMFRREE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
::.:...:::. ..:. :: .:::::: :::.::::: : :::.::: ::..: :...:.
NP_037 NAQAILLELAQDIDYALLPREIPGKGGPWEVIVKPRNSDGEFLNRLNRFLEEERRTVSDM
70 80 90 100 110 120
130 140 150 160 170
pF1KSD ARALGC---CSLPAESLDAE--VMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETF
:.:: :: : ... : . :. . ..: :.: ::.:.::::.. :: .:
NP_037 NRVLGSDTNCSAPRVTISPEFWTWAQTLGAAVQPLLEQMLYRELRVFSGNTISIPGALAF
130 140 150 160 170 180
180 190 200 210 220 230
pF1KSD EDWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIF
. :::..::.. .::: : ::::::.: ::::::... :.:.: :::::.:: ::.:.:
NP_037 DAWLEHTTEMLQMWQVPEGEKRRRLMECLRGPALQVVSGLRASNASITVEECLAALQQVF
190 200 210 220 230 240
240 250 260 270 280 290
pF1KSD GDKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLAR
: :. . .: .. .. . :::::.:.::::::::.::... .: :.... :::..:.
NP_037 GPVESHKIAQVKLCKAYQEAGEKVSSFVLRLEPLLQRAVENNVVSRRNVNQTRLKRVLSG
250 260 270 280 290 300
300 310 320 330 340
pF1KSD VAMTPALRGKLELLDQRGCPPNFLELMKLIRDEEEWENT-----EAV--MKNKEKPSGR-
... :: ::.:. :: ::.:: :.::.:.::::: : :.. .. .: .:
NP_037 ATLPDKLRDKLKLMKQRRKPPGFLALVKLLREEEEWEATLGPDRESLEGLEVAPRPPARI
310 320 330 340 350 360
350 360 370 380 390 400
pF1KSD -GRGASGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPL-----VKRRRLLGSEST
: :: : ... . :. . : . : .::. ::.: :
NP_037 TGVGAVPLPASGNSFDARPSQGYRRRR---GRGQHRRGGVARAGSRGSRKRKRHTFCYSC
370 380 390 400 410
410 420 430 440
pF1KSD RGED-HGQATYPKAENQTPGREGPQAAGEELGNEAGAGAMSHPKPWET
::: : .. . : .. ::: : :: : ::::
NP_037 -GEDGHIRVQCINPSNLLLVKQKKQAAVES-GNGNWAWDKSHPKSKAK
420 430 440 450 460
>>NP_006020 (OMIM: 604010) paraneoplastic antigen Ma1 [H (353 aa)
initn: 889 init1: 557 opt: 1072 Z-score: 1056.5 bits: 204.3 E(85289): 4.2e-52
Smith-Waterman score: 1072; 46.9% identity (78.5% similar) in 339 aa overlap (1-335:1-338)
10 20 30 40 50 60
pF1KSD MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
::.:::::::.:::.. ..:::. :::..:.:.::..:..:.. : .::.::::: ::.
NP_006 MAMTLLEDWCRGMDVNSQRALLVWGIPVNCDEAEIEETLQAAM-PQVSYRMLGRMFWREE
10 20 30 40 50
70 80 90 100 110 120
pF1KSD NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
::::...::. .:.:...: ..::::: :.:. :: . : ::: ::. :: :: .. ::
NP_006 NAKAALLELTGAVDYAAIPREMPGKGGVWKVLFKPPTSDAEFLERLHLFLAREGWTVQDV
60 70 80 90 100 110
130 140 150 160 170
pF1KSD ARALGCCS---LPAESLDAEVMPQVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFED
::.:: . :. . ::.. . . ..: ::.::..: .::: :.::::::.
NP_006 ARVLGFQNPTPTPGPEMPAEMLNYILDNVIQPLVESIWYKRLTLFSGRDIPGPGEETFDP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KSD WLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDALKQIFGD
:::...:.. ::::.:::::::.::::::: ...:.:..:: .::. .:: ::.:.::.
NP_006 WLEHTNEVLEEWQVSDVEKRRRLMESLRGPAADVIRILKSNNPAITTAECLKALEQVFGS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KSD KEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLKHLLARVA
:. : .:..::.: . :::.:....::::::::.:.:. .. .... ::....: .
NP_006 VESSRDAQIKFLNTYQNPGEKLSAYVIRLEPLLQKVVEKGAIDKDNVNQARLEQVIAGAN
240 250 260 270 280 290
300 310 320 330 340 350
pF1KSD MTPALRGKLELLDQ-RGCPPNFLELMKLIRDEEEWENTEAVMKNKEKPSGRGRGASGRQA
. :.: .: : .: ::...:. ::.:: :. :
NP_006 HSGAIRRQLWLTGAGEGPAPNLFQLLVQIREEEAKEEEEEAEATLLQLGLEGHF
300 310 320 330 340 350
360 370 380 390 400 410
pF1KSD RAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHGQATYPKAEN
>>XP_011542667 (OMIM: 603970) PREDICTED: paraneoplastic (364 aa)
initn: 1038 init1: 624 opt: 1047 Z-score: 1031.8 bits: 199.8 E(85289): 9.8e-51
Smith-Waterman score: 1047; 46.7% identity (76.5% similar) in 362 aa overlap (1-349:1-357)
10 20 30 40 50 60
pF1KSD MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED
:::.::::::. :..: .:.:...::: . :.:::.... :. : ::.::..::...
XP_011 MALALLEDWCRIMSVDEQKSLMVTGIPADFEEAEIQEVLQETLKSLGRYRLLGKIFRKQE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV
::.::..:: . .. ...::.. :::: :.:. : : : ::: ::: ::. ::.... .
XP_011 NANAVLLELLEDTDVSAIPSEVQGKGGVWKVIFKTPNQDTEFLERLNLFLEKEGQTVSGM
70 80 90 100 110 120
130 140 150 160 170
pF1KSD ARALGC-----CSLPAES--LDAEVMPQV--RSP-PLEPPKESMWYRKLKVFSGTASPSP
:::: ..: : : :... :. ..: :: : : ::::.::::.: :.:
XP_011 FRALGQEGVSPATVPCISPELLAHLLGQAMAHAPQPLLP----MRYRKLRVFSGSAVPAP
130 140 150 160 170
180 190 200 210 220 230
pF1KSD GEETFEDWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDSITVEQCLDA
::.:: ::::.:::. : :.:.::.: : ::::::::..:...::.: ::.::.::.:
XP_011 EEESFEVWLEQATEIVKEWPVTEAEKKRWLAESLRGPALDLMHIVQADNPSISVEECLEA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KSD LKQIFGDKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSVRSTDMIRLK
.::.::. :. :..: :.:.: . :::::...:::: ::..::.: . : .:..::.
XP_011 FKQVFGSLESRRTAQVRYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPRRIADQVRLE
240 250 260 270 280 290
300 310 320 330 340
pF1KSD HLLARVAMTPALRGKLELLDQRGCPPNFLELMKLIRDEEEWENT---EAVMKNKEKPSGR
...: .... : .:. : ..: ::.::::::.::.::: : . :.. . .:. .:
XP_011 QVMAGATLNQMLWCRLRELKDQGPPPSFLELMKVIREEEEEEASFENESIEEPEER-DGY
300 310 320 330 340 350
350 360 370 380 390 400
pF1KSD GRGASGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGSESTRGEDHG
::
XP_011 GRWNHEGDD
360
448 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:13:09 2016 done: Thu Nov 3 19:13:10 2016
Total Scan time: 9.860 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]