FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1942, 446 aa
  1>>>pF1KSDA1942 446 - 446 aa - 446 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9592+/-0.000866; mu= 5.2482+/- 0.052
 mean_var=171.4203+/-36.816, 0's: 0 Z-trim(112.2): 127  B-trim: 19 in 1/51
 Lambda= 0.097959
 statistics sampled from 12816 (12958) to 12816 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.398), width:  16
 Scan time:  3.100

The best scores are:                                      opt bits E(32554)
CCDS12720.1 GRWD1 gene_id:83743|Hs108|chr19        ( 446) 3068 445.7 4.3e-125


>>CCDS12720.1 GRWD1 gene_id:83743|Hs108|chr19             (446 aa)
 initn: 3068 init1: 3068 opt: 3068  Z-score: 2359.4  bits: 445.7 E(32554): 4.3e-125
Smith-Waterman score: 3068; 99.8% identity (100.0% similar) in 446 aa overlap (1-446:1-446)

               10        20        30        40        50        60
pF1KSD MAARKGRRRTCETGEPMEAESGDTSSEGPAQVYLPGRGPPLREGEELVMDEEAYVLYHRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAARKGRRRTCETGEPMEAESGDTSSEGPAQVYLPGRGPPLREGEELVMDEEAYVLYHRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHGTKPPPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHGTKPPPSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GSDEEEEEEDEEDEEERKPQLELAMVPHYGGINRVRVSWLGEEPVAGVWSEKGQVEVFAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GSDEEEEEEDEEDEEERKPQLELAMVPHYGGINRVRVSWLGEEPVAGVWSEKGQVEVFAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD RRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LTTATAHDGDVNVISWSRQEPFLLSGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVE
       ::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
CCDS12 LTTATAHDGDVNVISWSRREPFLLSGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD WHPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WHPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKEL
              370       380       390       400       410       420

              430       440      
pF1KSD HWHPQCPGLLVSTALSGFTIFRTISV
       ::::::::::::::::::::::::::
CCDS12 HWHPQCPGLLVSTALSGFTIFRTISV
              430       440      




446 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:45:40 2016 done: Thu Nov  3 07:45:40 2016
 Total Scan time:  3.100 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]