Result of FASTA (omim) for
pF1KSDA1942
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1942, 446 aa
1>>>pF1KSDA1942 446 - 446 aa - 446 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0422+/-0.000342; mu= 10.6963+/- 0.022
mean_var=190.3938+/-41.507, 0's: 0 Z-trim(119.7): 215 B-trim: 107 in 1/52
Lambda= 0.092950
statistics sampled from 33732 (34019) to 33732 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.399), width: 16
Scan time: 10.500
The best scores are: opt bits E(85289)
NP_113673 (OMIM: 610597) glutamate-rich WD repeat- ( 446) 3068 424.0 4e-118
XP_005267076 (OMIM: 215100,266500,601757,614879) P ( 285) 296 52.0 2.3e-06
NP_000279 (OMIM: 215100,266500,601757,614879) pero ( 323) 296 52.1 2.5e-06
XP_016863186 (OMIM: 609005) PREDICTED: WD repeat-c ( 982) 272 49.4 4.9e-05
XP_005262782 (OMIM: 609005) PREDICTED: WD repeat-c (1216) 272 49.5 5.7e-05
NP_851782 (OMIM: 609005) WD repeat-containing prot (1283) 272 49.6 5.9e-05
XP_011529884 (OMIM: 609005) PREDICTED: WD repeat-c (1290) 272 49.6 5.9e-05
XP_016863178 (OMIM: 609005) PREDICTED: WD repeat-c (1307) 272 49.6 5.9e-05
XP_016863179 (OMIM: 609005) PREDICTED: WD repeat-c (1307) 272 49.6 5.9e-05
XP_016863175 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 272 49.6 5.9e-05
XP_016863176 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 272 49.6 5.9e-05
XP_016863177 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 272 49.6 5.9e-05
NP_733828 (OMIM: 609005) WD repeat-containing prot (1322) 272 49.6 6e-05
NP_001128728 (OMIM: 602923) histone-binding protei ( 390) 240 44.7 0.00053
NP_001128727 (OMIM: 602923) histone-binding protei ( 424) 240 44.7 0.00056
NP_005601 (OMIM: 602923) histone-binding protein R ( 425) 240 44.7 0.00056
XP_016866423 (OMIM: 215100,266500,601757,614879) P ( 199) 223 42.1 0.0016
NP_002884 (OMIM: 300825) histone-binding protein R ( 425) 220 42.0 0.0036
NP_001185648 (OMIM: 300825) histone-binding protei ( 469) 220 42.1 0.0038
XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-c ( 334) 217 41.5 0.004
NP_060058 (OMIM: 609012) WD repeat-containing prot ( 334) 217 41.5 0.004
NP_438172 (OMIM: 609012) WD repeat-containing prot ( 334) 217 41.5 0.004
NP_001129669 (OMIM: 603619) fizzy-related protein ( 404) 218 41.7 0.0042
NP_057347 (OMIM: 603619) fizzy-related protein hom ( 493) 218 41.8 0.0047
NP_001129670 (OMIM: 603619) fizzy-related protein ( 496) 218 41.9 0.0048
XP_005259630 (OMIM: 603619) PREDICTED: fizzy-relat ( 496) 218 41.9 0.0048
XP_016877356 (OMIM: 604447) PREDICTED: guanine nuc ( 212) 212 40.6 0.0048
XP_016882352 (OMIM: 603619) PREDICTED: fizzy-relat ( 528) 218 41.9 0.005
XP_016863001 (OMIM: 606990) PREDICTED: coatomer su ( 877) 220 42.4 0.0057
NP_004757 (OMIM: 606990) coatomer subunit beta' [H ( 906) 220 42.4 0.0059
XP_011519465 (OMIM: 604447) PREDICTED: guanine nuc ( 301) 212 40.8 0.006
NP_006569 (OMIM: 604447) guanine nucleotide-bindin ( 353) 212 40.9 0.0066
XP_011519464 (OMIM: 604447) PREDICTED: guanine nuc ( 353) 212 40.9 0.0066
NP_057278 (OMIM: 604447) guanine nucleotide-bindin ( 395) 212 40.9 0.0072
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436) 210 40.7 0.0092
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 210 40.8 0.0098
>>NP_113673 (OMIM: 610597) glutamate-rich WD repeat-cont (446 aa)
initn: 3068 init1: 3068 opt: 3068 Z-score: 2241.7 bits: 424.0 E(85289): 4e-118
Smith-Waterman score: 3068; 99.8% identity (100.0% similar) in 446 aa overlap (1-446:1-446)
10 20 30 40 50 60
pF1KSD MAARKGRRRTCETGEPMEAESGDTSSEGPAQVYLPGRGPPLREGEELVMDEEAYVLYHRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 MAARKGRRRTCETGEPMEAESGDTSSEGPAQVYLPGRGPPLREGEELVMDEEAYVLYHRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD QTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHGTKPPPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 QTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHGTKPPPSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GSDEEEEEEDEEDEEERKPQLELAMVPHYGGINRVRVSWLGEEPVAGVWSEKGQVEVFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 GSDEEEEEEDEEDEEERKPQLELAMVPHYGGINRVRVSWLGEEPVAGVWSEKGQVEVFAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD RRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 RRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 LWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LTTATAHDGDVNVISWSRQEPFLLSGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVE
::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
NP_113 LTTATAHDGDVNVISWSRREPFLLSGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD WHPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 WHPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKEL
370 380 390 400 410 420
430 440
pF1KSD HWHPQCPGLLVSTALSGFTIFRTISV
::::::::::::::::::::::::::
NP_113 HWHPQCPGLLVSTALSGFTIFRTISV
430 440
>>XP_005267076 (OMIM: 215100,266500,601757,614879) PREDI (285 aa)
initn: 217 init1: 120 opt: 296 Z-score: 235.1 bits: 52.0 E(85289): 2.3e-06
Smith-Waterman score: 301; 26.8% identity (55.3% similar) in 228 aa overlap (197-422:56-269)
170 180 190 200 210 220
pF1KSD GVWSEKGQVEVFALRRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSP-R
: : :. . : : ...::: :
XP_005 FDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWSQTR
30 40 50 60 70 80
230 240 250 260 270 280
pF1KSD VTGRLLTGDCQKNIHLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADAS
...:. .....:: :: : : . : :: . . ::: ::: :.: .
XP_005 GEQLVVSGSWDQTVKLWDPTVGKSLCT----FRGHESIIYSTIWSPHIPGCFASASGDQT
90 100 110 120 130 140
290 300 310 320 330 340
pF1KSD IRIWDIRAAPSKACMLTTATAHDGDVNVISWSR-QEPFLLSGGDDGALKIWDLRQFKSGS
.::::..:: . . ::.... .: . .: .:..:. : .:. ::::. ..
XP_005 LRIWDVKAAGVRIVI----PAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQ--
150 160 170 180 190
350 360 370 380 390 400
pF1KSD PVATFKQHVAPVTSVEWHPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLP
:: . :. . :.. : ..:.:. . : . :... :.. .:. ...
XP_005 PVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFS---KPDSL-LETVEHHTEFT
200 210 220 230 240 250
410 420 430 440
pF1KSD QQLLFVHQGETELKELHWHPQCPGLLVSTALSGFTIFRTISV
: : :. :.. . :
XP_005 CGLDFSLQSPTQVADCSWDETIKIYDPACLTIPA
260 270 280
>>NP_000279 (OMIM: 215100,266500,601757,614879) peroxiso (323 aa)
initn: 241 init1: 120 opt: 296 Z-score: 234.4 bits: 52.1 E(85289): 2.5e-06
Smith-Waterman score: 301; 26.8% identity (55.3% similar) in 228 aa overlap (197-422:94-307)
170 180 190 200 210 220
pF1KSD GVWSEKGQVEVFALRRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSP-R
: : :. . : : ...::: :
NP_000 FDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWSQTR
70 80 90 100 110 120
230 240 250 260 270 280
pF1KSD VTGRLLTGDCQKNIHLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADAS
...:. .....:: :: : : . : :: . . ::: ::: :.: .
NP_000 GEQLVVSGSWDQTVKLWDPTVGKSLCT----FRGHESIIYSTIWSPHIPGCFASASGDQT
130 140 150 160 170
290 300 310 320 330 340
pF1KSD IRIWDIRAAPSKACMLTTATAHDGDVNVISWSR-QEPFLLSGGDDGALKIWDLRQFKSGS
.::::..:: . . ::.... .: . .: .:..:. : .:. ::::. ..
NP_000 LRIWDVKAAGVRIVI----PAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQ--
180 190 200 210 220 230
350 360 370 380 390 400
pF1KSD PVATFKQHVAPVTSVEWHPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLP
:: . :. . :.. : ..:.:. . : . :... :.. .:. ...
NP_000 PVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFS---KPDSL-LETVEHHTEFT
240 250 260 270 280
410 420 430 440
pF1KSD QQLLFVHQGETELKELHWHPQCPGLLVSTALSGFTIFRTISV
: : :. :.. . :
NP_000 CGLDFSLQSPTQVADCSWDETIKIYDPACLTIPA
290 300 310 320
>>XP_016863186 (OMIM: 609005) PREDICTED: WD repeat-conta (982 aa)
initn: 226 init1: 116 opt: 272 Z-score: 211.4 bits: 49.4 E(85289): 4.9e-05
Smith-Waterman score: 272; 28.5% identity (57.5% similar) in 186 aa overlap (213-397:520-696)
190 200 210 220 230 240
pF1KSD LLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLW
: . :. ::: . :: . :....
XP_016 HKDSKRIATCSSDGFCIIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDTNVRVY
490 500 510 520 530 540
250 260 270 280 290 300
pF1KSD TPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLT
. ... . . : ::: .: ..::: .. .. : : :...:::: . ::. .
XP_016 YVATSSDQPL--KVFSGHTAKVFHVKWSPLREGILCSGSDDGTVRIWDYT---QDACI-N
550 560 570 580 590 600
310 320 330 340 350 360
pF1KSD TATAHDGDVNVISWSRQEPFLL-SGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEW
..: . : . :. . :.:: ::. : ..:.:: :. :. : : .: : : ..
XP_016 ILNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTRE---GTCVDTVYDHGADVYGLTC
610 620 630 640 650 660
370 380 390 400 410 420
pF1KSD HPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKELH
::. ..:. . : . :.:.. : .. ::
XP_016 HPSRPFTMASCSRDSTVRLWSLTALVTPVQINILADRSWEEIIGNTDYAIEPGTPPLLCG
670 680 690 700 710 720
430 440
pF1KSD WHPQCPGLLVSTALSGFTIFRTISV
XP_016 KVSRDIRQEIEKLTANSQVKKLRWFSECLSPPGGSDNLWNLVAVIKGQDDSLLPQNYCKG
730 740 750 760 770 780
>>XP_005262782 (OMIM: 609005) PREDICTED: WD repeat-conta (1216 aa)
initn: 226 init1: 116 opt: 272 Z-score: 210.3 bits: 49.5 E(85289): 5.7e-05
Smith-Waterman score: 272; 28.5% identity (57.5% similar) in 186 aa overlap (213-397:422-598)
190 200 210 220 230 240
pF1KSD LLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLW
: . :. ::: . :: . :....
XP_005 HKDSKRIATCSSDGFCIIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDTNVRVY
400 410 420 430 440 450
250 260 270 280 290 300
pF1KSD TPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLT
. ... . . : ::: .: ..::: .. .. : : :...:::: . ::. .
XP_005 YVATSSDQPL--KVFSGHTAKVFHVKWSPLREGILCSGSDDGTVRIWDYT---QDACI-N
460 470 480 490 500
310 320 330 340 350 360
pF1KSD TATAHDGDVNVISWSRQEPFLL-SGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEW
..: . : . :. . :.:: ::. : ..:.:: :. :. : : .: : : ..
XP_005 ILNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTRE---GTCVDTVYDHGADVYGLTC
510 520 530 540 550 560
370 380 390 400 410 420
pF1KSD HPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKELH
::. ..:. . : . :.:.. : .. ::
XP_005 HPSRPFTMASCSRDSTVRLWSLTALVTPVQINILADRSWEEIIGNTDYAIEPGTPPLLCG
570 580 590 600 610 620
430 440
pF1KSD WHPQCPGLLVSTALSGFTIFRTISV
XP_005 KVSRDIRQEIEKLTANSQVKKLRWFSECLSPPGGSDNLWNLVAVIKGQDDSLLPQNYCKG
630 640 650 660 670 680
>>NP_851782 (OMIM: 609005) WD repeat-containing protein (1283 aa)
initn: 226 init1: 116 opt: 272 Z-score: 210.0 bits: 49.6 E(85289): 5.9e-05
Smith-Waterman score: 272; 28.5% identity (57.5% similar) in 186 aa overlap (213-397:496-672)
190 200 210 220 230 240
pF1KSD LLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLW
: . :. ::: . :: . :....
NP_851 HKDSKRIATCSSDGFCIIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDTNVRVY
470 480 490 500 510 520
250 260 270 280 290 300
pF1KSD TPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLT
. ... . . : ::: .: ..::: .. .. : : :...:::: . ::. .
NP_851 YVATSSDQPL--KVFSGHTAKVFHVKWSPLREGILCSGSDDGTVRIWDYT---QDACI-N
530 540 550 560 570
310 320 330 340 350 360
pF1KSD TATAHDGDVNVISWSRQEPFLL-SGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEW
..: . : . :. . :.:: ::. : ..:.:: :. :. : : .: : : ..
NP_851 ILNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTRE---GTCVDTVYDHGADVYGLTC
580 590 600 610 620 630
370 380 390 400 410 420
pF1KSD HPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKELH
::. ..:. . : . :.:.. : .. ::
NP_851 HPSRPFTMASCSRDSTVRLWSLTALVTPVQINILADRSWEEIIGNTDYAIEPGTPPLLCG
640 650 660 670 680 690
430 440
pF1KSD WHPQCPGLLVSTALSGFTIFRTISV
NP_851 KVSRDIRQEIEKLTANSQVKKLRWFSECLSPPGGSDNLWNLVAVIKGQDDSLLPQNYCKG
700 710 720 730 740 750
>>XP_011529884 (OMIM: 609005) PREDICTED: WD repeat-conta (1290 aa)
initn: 226 init1: 116 opt: 272 Z-score: 210.0 bits: 49.6 E(85289): 5.9e-05
Smith-Waterman score: 272; 28.5% identity (57.5% similar) in 186 aa overlap (213-397:496-672)
190 200 210 220 230 240
pF1KSD LLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLW
: . :. ::: . :: . :....
XP_011 HKDSKRIATCSSDGFCIIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDTNVRVY
470 480 490 500 510 520
250 260 270 280 290 300
pF1KSD TPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLT
. ... . . : ::: .: ..::: .. .. : : :...:::: . ::. .
XP_011 YVATSSDQPL--KVFSGHTAKVFHVKWSPLREGILCSGSDDGTVRIWDYT---QDACI-N
530 540 550 560 570
310 320 330 340 350 360
pF1KSD TATAHDGDVNVISWSRQEPFLL-SGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEW
..: . : . :. . :.:: ::. : ..:.:: :. :. : : .: : : ..
XP_011 ILNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTRE---GTCVDTVYDHGADVYGLTC
580 590 600 610 620 630
370 380 390 400 410 420
pF1KSD HPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKELH
::. ..:. . : . :.:.. : .. ::
XP_011 HPSRPFTMASCSRDSTVRLWSLTALVTPVQINILADRSWEEIIGNTDYAIEPGTPPLLCG
640 650 660 670 680 690
430 440
pF1KSD WHPQCPGLLVSTALSGFTIFRTISV
XP_011 KVSRDIRQEIEKLTANSQVKKLRWFSECLSPPGGSDNLWNLVAVIKGQDDSLLPQNYCKG
700 710 720 730 740 750
>>XP_016863178 (OMIM: 609005) PREDICTED: WD repeat-conta (1307 aa)
initn: 226 init1: 116 opt: 272 Z-score: 209.9 bits: 49.6 E(85289): 5.9e-05
Smith-Waterman score: 272; 28.5% identity (57.5% similar) in 186 aa overlap (213-397:520-696)
190 200 210 220 230 240
pF1KSD LLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLW
: . :. ::: . :: . :....
XP_016 HKDSKRIATCSSDGFCIIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDTNVRVY
490 500 510 520 530 540
250 260 270 280 290 300
pF1KSD TPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLT
. ... . . : ::: .: ..::: .. .. : : :...:::: . ::. .
XP_016 YVATSSDQPL--KVFSGHTAKVFHVKWSPLREGILCSGSDDGTVRIWDYT---QDACI-N
550 560 570 580 590 600
310 320 330 340 350 360
pF1KSD TATAHDGDVNVISWSRQEPFLL-SGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEW
..: . : . :. . :.:: ::. : ..:.:: :. :. : : .: : : ..
XP_016 ILNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTRE---GTCVDTVYDHGADVYGLTC
610 620 630 640 650 660
370 380 390 400 410 420
pF1KSD HPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKELH
::. ..:. . : . :.:.. : .. ::
XP_016 HPSRPFTMASCSRDSTVRLWSLTALVTPVQINILADRSWEEIIGNTDYAIEPGTPPLLCG
670 680 690 700 710 720
430 440
pF1KSD WHPQCPGLLVSTALSGFTIFRTISV
XP_016 KVSRDIRQEIEKLTANSQVKKLRWFSECLSPPGGSDNLWNLVAVIKGQDDSLLPQNYCKG
730 740 750 760 770 780
>>XP_016863179 (OMIM: 609005) PREDICTED: WD repeat-conta (1307 aa)
initn: 226 init1: 116 opt: 272 Z-score: 209.9 bits: 49.6 E(85289): 5.9e-05
Smith-Waterman score: 272; 28.5% identity (57.5% similar) in 186 aa overlap (213-397:520-696)
190 200 210 220 230 240
pF1KSD LLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLW
: . :. ::: . :: . :....
XP_016 HKDSKRIATCSSDGFCIIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDTNVRVY
490 500 510 520 530 540
250 260 270 280 290 300
pF1KSD TPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLT
. ... . . : ::: .: ..::: .. .. : : :...:::: . ::. .
XP_016 YVATSSDQPL--KVFSGHTAKVFHVKWSPLREGILCSGSDDGTVRIWDYT---QDACI-N
550 560 570 580 590 600
310 320 330 340 350 360
pF1KSD TATAHDGDVNVISWSRQEPFLL-SGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEW
..: . : . :. . :.:: ::. : ..:.:: :. :. : : .: : : ..
XP_016 ILNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTRE---GTCVDTVYDHGADVYGLTC
610 620 630 640 650 660
370 380 390 400 410 420
pF1KSD HPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKELH
::. ..:. . : . :.:.. : .. ::
XP_016 HPSRPFTMASCSRDSTVRLWSLTALVTPVQINILADRSWEEIIGNTDYAIEPGTPPLLCG
670 680 690 700 710 720
430 440
pF1KSD WHPQCPGLLVSTALSGFTIFRTISV
XP_016 KVSRDIRQEIEKLTANSQVKKLRWFSECLSPPGGSDNLWNLVAVIKGQDDSLLPQNYCKG
730 740 750 760 770 780
>>XP_016863175 (OMIM: 609005) PREDICTED: WD repeat-conta (1314 aa)
initn: 226 init1: 116 opt: 272 Z-score: 209.9 bits: 49.6 E(85289): 5.9e-05
Smith-Waterman score: 272; 28.5% identity (57.5% similar) in 186 aa overlap (213-397:520-696)
190 200 210 220 230 240
pF1KSD LLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLW
: . :. ::: . :: . :....
XP_016 HKDSKRIATCSSDGFCIIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDTNVRVY
490 500 510 520 530 540
250 260 270 280 290 300
pF1KSD TPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLT
. ... . . : ::: .: ..::: .. .. : : :...:::: . ::. .
XP_016 YVATSSDQPL--KVFSGHTAKVFHVKWSPLREGILCSGSDDGTVRIWDYT---QDACI-N
550 560 570 580 590 600
310 320 330 340 350 360
pF1KSD TATAHDGDVNVISWSRQEPFLL-SGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEW
..: . : . :. . :.:: ::. : ..:.:: :. :. : : .: : : ..
XP_016 ILNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTRE---GTCVDTVYDHGADVYGLTC
610 620 630 640 650 660
370 380 390 400 410 420
pF1KSD HPQDSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKELH
::. ..:. . : . :.:.. : .. ::
XP_016 HPSRPFTMASCSRDSTVRLWSLTALVTPVQINILADRSWEEIIGNTDYAIEPGTPPLLCG
670 680 690 700 710 720
430 440
pF1KSD WHPQCPGLLVSTALSGFTIFRTISV
XP_016 KVSRDIRQEIEKLTANSQVKKLRWFSECLSPPGGSDNLWNLVAVIKGQDDSLLPQNYCKG
730 740 750 760 770 780
446 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 07:45:41 2016 done: Thu Nov 3 07:45:42 2016
Total Scan time: 10.500 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]