FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1949, 613 aa
  1>>>pF1KSDA1949 613 - 613 aa - 613 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.7864+/-0.000982; mu= -7.4611+/- 0.059
 mean_var=409.8336+/-83.500, 0's: 0 Z-trim(117.4): 11  B-trim: 465 in 1/53
 Lambda= 0.063353
 statistics sampled from 18082 (18091) to 18082 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.556), width:  16
 Scan time:  4.890

The best scores are:                                      opt bits E(32554)
CCDS43444.1 PPP1R18 gene_id:170954|Hs108|chr6      ( 613) 4164 394.6 2.1e-109


>>CCDS43444.1 PPP1R18 gene_id:170954|Hs108|chr6           (613 aa)
 initn: 4164 init1: 4164 opt: 4164  Z-score: 2077.8  bits: 394.6 E(32554): 2.1e-109
Smith-Waterman score: 4164; 100.0% identity (100.0% similar) in 613 aa overlap (1-613:1-613)

               10        20        30        40        50        60
pF1KSD MATIPDWKLQLLARRRQEEASVRGREKAERERLSQMPAWKRGLLERRRAKLGLSPGEPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MATIPDWKLQLLARRRQEEASVRGREKAERERLSQMPAWKRGLLERRRAKLGLSPGEPSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VLGTVEAGPPDPDESAVLLEAIGPVHQNRFIRQERQQQQQQQQRSEELLAERKPGPLEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VLGTVEAGPPDPDESAVLLEAIGPVHQNRFIRQERQQQQQQQQRSEELLAERKPGPLEAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ERRPSPGEMRDQSPKGRESREERLSPRETRERRLGIGGAQELSLRPLEARDWRQSPGEVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ERRPSPGEMRDQSPKGRESREERLSPRETRERRLGIGGAQELSLRPLEARDWRQSPGEVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DRSSRLSEAWKWRLSPGETPERSLRLAESREQSPRRKEVESRLSPGESAYQKLGLTEAHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DRSSRLSEAWKWRLSPGETPERSLRLAESREQSPRRKEVESRLSPGESAYQKLGLTEAHK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WRPDSRESQEQSLVQLEATEWRLRSGEERQDYSEECGRKEEWPVPGVAPKETAELSETLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WRPDSRESQEQSLVQLEATEWRLRSGEERQDYSEECGRKEEWPVPGVAPKETAELSETLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD REAQGNSSAGVEAAEQRPVEDGERGMKPTEGWKWTLNSGKAREWTPRDIEAQTQKPEPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 REAQGNSSAGVEAAEQRPVEDGERGMKPTEGWKWTLNSGKAREWTPRDIEAQTQKPEPPE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SAEKLLESPGVEAGEGEAEKEEAGAQGRPLRALQNCCSVPSPLPPEDAGTGGLRQQEEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SAEKLLESPGVEAGEGEAEKEEAGAQGRPLRALQNCCSVPSPLPPEDAGTGGLRQQEEEA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VELQPPPPAPLSPPPPAPTAPQPPGDPLMSRLFYGVKAGPGVGAPRRSGHTFTVNPRRSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VELQPPPPAPLSPPPPAPTAPQPPGDPLMSRLFYGVKAGPGVGAPRRSGHTFTVNPRRSV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD PPATPATPTSPATVDAAVPGAGKKRYPTAEEILVLGGYLRLSRSCLAKGSPERHHKQLKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PPATPATPTSPATVDAAVPGAGKKRYPTAEEILVLGGYLRLSRSCLAKGSPERHHKQLKI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SFSETALETTYQYPSESSVLEELGPEPEVPSAPNPPAAQPDDEEDEEELLLLQPELQGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SFSETALETTYQYPSESSVLEELGPEPEVPSAPNPPAAQPDDEEDEEELLLLQPELQGGL
              550       560       570       580       590       600

              610   
pF1KSD RTKALIVDESCRR
       :::::::::::::
CCDS43 RTKALIVDESCRR
              610   




613 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:46:20 2016 done: Thu Nov  3 07:46:21 2016
 Total Scan time:  4.890 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]