FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1949, 613 aa
  1>>>pF1KSDA1949 613 - 613 aa - 613 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.8043+/-0.000403; mu= -13.8291+/- 0.025
 mean_var=464.7248+/-96.930, 0's: 0 Z-trim(125.2): 3  B-trim: 2133 in 1/57
 Lambda= 0.059494
 statistics sampled from 48574 (48582) to 48574 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.57), width:  16
 Scan time: 14.400

The best scores are:                                      opt bits E(85289)
NP_001128342 (OMIM: 610990) phostensin [Homo sapie ( 613) 4164 371.7 4.1e-102
NP_597728 (OMIM: 610990) phostensin [Homo sapiens] ( 613) 4164 371.7 4.1e-102


>>NP_001128342 (OMIM: 610990) phostensin [Homo sapiens]   (613 aa)
 initn: 4164 init1: 4164 opt: 4164  Z-score: 1954.3  bits: 371.7 E(85289): 4.1e-102
Smith-Waterman score: 4164; 100.0% identity (100.0% similar) in 613 aa overlap (1-613:1-613)

               10        20        30        40        50        60
pF1KSD MATIPDWKLQLLARRRQEEASVRGREKAERERLSQMPAWKRGLLERRRAKLGLSPGEPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATIPDWKLQLLARRRQEEASVRGREKAERERLSQMPAWKRGLLERRRAKLGLSPGEPSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VLGTVEAGPPDPDESAVLLEAIGPVHQNRFIRQERQQQQQQQQRSEELLAERKPGPLEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLGTVEAGPPDPDESAVLLEAIGPVHQNRFIRQERQQQQQQQQRSEELLAERKPGPLEAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ERRPSPGEMRDQSPKGRESREERLSPRETRERRLGIGGAQELSLRPLEARDWRQSPGEVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERRPSPGEMRDQSPKGRESREERLSPRETRERRLGIGGAQELSLRPLEARDWRQSPGEVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DRSSRLSEAWKWRLSPGETPERSLRLAESREQSPRRKEVESRLSPGESAYQKLGLTEAHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRSSRLSEAWKWRLSPGETPERSLRLAESREQSPRRKEVESRLSPGESAYQKLGLTEAHK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WRPDSRESQEQSLVQLEATEWRLRSGEERQDYSEECGRKEEWPVPGVAPKETAELSETLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WRPDSRESQEQSLVQLEATEWRLRSGEERQDYSEECGRKEEWPVPGVAPKETAELSETLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD REAQGNSSAGVEAAEQRPVEDGERGMKPTEGWKWTLNSGKAREWTPRDIEAQTQKPEPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REAQGNSSAGVEAAEQRPVEDGERGMKPTEGWKWTLNSGKAREWTPRDIEAQTQKPEPPE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SAEKLLESPGVEAGEGEAEKEEAGAQGRPLRALQNCCSVPSPLPPEDAGTGGLRQQEEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAEKLLESPGVEAGEGEAEKEEAGAQGRPLRALQNCCSVPSPLPPEDAGTGGLRQQEEEA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VELQPPPPAPLSPPPPAPTAPQPPGDPLMSRLFYGVKAGPGVGAPRRSGHTFTVNPRRSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VELQPPPPAPLSPPPPAPTAPQPPGDPLMSRLFYGVKAGPGVGAPRRSGHTFTVNPRRSV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD PPATPATPTSPATVDAAVPGAGKKRYPTAEEILVLGGYLRLSRSCLAKGSPERHHKQLKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPATPATPTSPATVDAAVPGAGKKRYPTAEEILVLGGYLRLSRSCLAKGSPERHHKQLKI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SFSETALETTYQYPSESSVLEELGPEPEVPSAPNPPAAQPDDEEDEEELLLLQPELQGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFSETALETTYQYPSESSVLEELGPEPEVPSAPNPPAAQPDDEEDEEELLLLQPELQGGL
              550       560       570       580       590       600

              610   
pF1KSD RTKALIVDESCRR
       :::::::::::::
NP_001 RTKALIVDESCRR
              610   

>>NP_597728 (OMIM: 610990) phostensin [Homo sapiens]      (613 aa)
 initn: 4164 init1: 4164 opt: 4164  Z-score: 1954.3  bits: 371.7 E(85289): 4.1e-102
Smith-Waterman score: 4164; 100.0% identity (100.0% similar) in 613 aa overlap (1-613:1-613)

               10        20        30        40        50        60
pF1KSD MATIPDWKLQLLARRRQEEASVRGREKAERERLSQMPAWKRGLLERRRAKLGLSPGEPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 MATIPDWKLQLLARRRQEEASVRGREKAERERLSQMPAWKRGLLERRRAKLGLSPGEPSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VLGTVEAGPPDPDESAVLLEAIGPVHQNRFIRQERQQQQQQQQRSEELLAERKPGPLEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 VLGTVEAGPPDPDESAVLLEAIGPVHQNRFIRQERQQQQQQQQRSEELLAERKPGPLEAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ERRPSPGEMRDQSPKGRESREERLSPRETRERRLGIGGAQELSLRPLEARDWRQSPGEVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 ERRPSPGEMRDQSPKGRESREERLSPRETRERRLGIGGAQELSLRPLEARDWRQSPGEVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DRSSRLSEAWKWRLSPGETPERSLRLAESREQSPRRKEVESRLSPGESAYQKLGLTEAHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 DRSSRLSEAWKWRLSPGETPERSLRLAESREQSPRRKEVESRLSPGESAYQKLGLTEAHK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WRPDSRESQEQSLVQLEATEWRLRSGEERQDYSEECGRKEEWPVPGVAPKETAELSETLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 WRPDSRESQEQSLVQLEATEWRLRSGEERQDYSEECGRKEEWPVPGVAPKETAELSETLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD REAQGNSSAGVEAAEQRPVEDGERGMKPTEGWKWTLNSGKAREWTPRDIEAQTQKPEPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 REAQGNSSAGVEAAEQRPVEDGERGMKPTEGWKWTLNSGKAREWTPRDIEAQTQKPEPPE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SAEKLLESPGVEAGEGEAEKEEAGAQGRPLRALQNCCSVPSPLPPEDAGTGGLRQQEEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 SAEKLLESPGVEAGEGEAEKEEAGAQGRPLRALQNCCSVPSPLPPEDAGTGGLRQQEEEA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VELQPPPPAPLSPPPPAPTAPQPPGDPLMSRLFYGVKAGPGVGAPRRSGHTFTVNPRRSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 VELQPPPPAPLSPPPPAPTAPQPPGDPLMSRLFYGVKAGPGVGAPRRSGHTFTVNPRRSV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD PPATPATPTSPATVDAAVPGAGKKRYPTAEEILVLGGYLRLSRSCLAKGSPERHHKQLKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 PPATPATPTSPATVDAAVPGAGKKRYPTAEEILVLGGYLRLSRSCLAKGSPERHHKQLKI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SFSETALETTYQYPSESSVLEELGPEPEVPSAPNPPAAQPDDEEDEEELLLLQPELQGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 SFSETALETTYQYPSESSVLEELGPEPEVPSAPNPPAAQPDDEEDEEELLLLQPELQGGL
              550       560       570       580       590       600

              610   
pF1KSD RTKALIVDESCRR
       :::::::::::::
NP_597 RTKALIVDESCRR
              610   




613 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:46:21 2016 done: Thu Nov  3 07:46:23 2016
 Total Scan time: 14.400 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]