FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1972, 576 aa
  1>>>pF1KSDA1972 576 - 576 aa - 576 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3873+/-0.000956; mu= 14.3995+/- 0.057
 mean_var=110.7410+/-22.951, 0's: 0 Z-trim(109.1): 54  B-trim: 433 in 2/50
 Lambda= 0.121876
 statistics sampled from 10580 (10633) to 10580 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.327), width:  16
 Scan time:  3.260

The best scores are:                                      opt bits E(32554)
CCDS10775.1 RSPRY1 gene_id:89970|Hs108|chr16       ( 576) 3921 700.5 1.4e-201


>>CCDS10775.1 RSPRY1 gene_id:89970|Hs108|chr16            (576 aa)
 initn: 3921 init1: 3921 opt: 3921  Z-score: 3732.5  bits: 700.5 E(32554): 1.4e-201
Smith-Waterman score: 3921; 100.0% identity (100.0% similar) in 576 aa overlap (1-576:1-576)

               10        20        30        40        50        60
pF1KSD MIVFGWAVFLASRSLGQGLLLTLEEHIAHFLGTGGAATTMGNSCICRDDSGTDDSVDTQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MIVFGWAVFLASRSLGQGLLLTLEEHIAHFLGTGGAATTMGNSCICRDDSGTDDSVDTQQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QQAENSAVPTADTRSQPRDPVRPPRRGRGPHEPRRKKQNVDGLVLDTLAVIRTLVDNDQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QQAENSAVPTADTRSQPRDPVRPPRRGRGPHEPRRKKQNVDGLVLDTLAVIRTLVDNDQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PPYSMITLHEMAETDEGWLDVVQSLIRVIPLEDPLGPAVITLLLDECPLPTKDALQKLTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PPYSMITLHEMAETDEGWLDVVQSLIRVIPLEDPLGPAVITLLLDECPLPTKDALQKLTE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD ILNLNGEVACQDSSHPAKHRNTSAVLGCLAEKLAGPASIGLLSPGILEYLLQCLKLQSHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ILNLNGEVACQDSSHPAKHRNTSAVLGCLAEKLAGPASIGLLSPGILEYLLQCLKLQSHP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TVMLFALIALEKFAQTSENKLTISESSISDRLVTLESWANDPDYLKRQVGFCAQWSLDNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TVMLFALIALEKFAQTSENKLTISESSISDRLVTLESWANDPDYLKRQVGFCAQWSLDNL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD FLKEGRQLTYEKVNLSSIRAMLNSNDVSEYLKISPHGLEARCDASSFESVRCTFCVDAGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FLKEGRQLTYEKVNLSSIRAMLNSNDVSEYLKISPHGLEARCDASSFESVRCTFCVDAGV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD WYYEVTVVTSGVMQIGWATRDSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARSKPHIHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WYYEVTVVTSGVMQIGWATRDSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARSKPHIHP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD CWKEGDTVGFLLDLNEKQMIFFLNGNQLPPEKQVFSSTVSGFFAAASFMSYQQCEFNFGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CWKEGDTVGFLLDLNEKQMIFFLNGNQLPPEKQVFSSTVSGFFAAASFMSYQQCEFNFGA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD KPFKYPPSMKFSTFNDYAFLTAEEKIILPRHRRLALLKQVSIRENCCSLCCDEVADTQLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KPFKYPPSMKFSTFNDYAFLTAEEKIILPRHRRLALLKQVSIRENCCSLCCDEVADTQLK
              490       500       510       520       530       540

              550       560       570      
pF1KSD PCGHSDLCMDCALQLETCPLCRKEIVSRIRQISHIS
       ::::::::::::::::::::::::::::::::::::
CCDS10 PCGHSDLCMDCALQLETCPLCRKEIVSRIRQISHIS
              550       560       570      




576 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:54:31 2016 done: Thu Nov  3 07:54:32 2016
 Total Scan time:  3.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]