FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1991, 708 aa
  1>>>pF1KSDA1991 708 - 708 aa - 708 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1562+/-0.000829; mu= 11.0554+/- 0.050
 mean_var=241.6229+/-48.782, 0's: 0 Z-trim(115.6): 14  B-trim: 0 in 0/55
 Lambda= 0.082510
 statistics sampled from 16118 (16125) to 16118 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.495), width:  16
 Scan time:  3.510

The best scores are:                                      opt bits E(32554)
CCDS41691.1 RNF169 gene_id:254225|Hs108|chr11      ( 708) 4686 570.9 2.3e-162


>>CCDS41691.1 RNF169 gene_id:254225|Hs108|chr11           (708 aa)
 initn: 4686 init1: 4686 opt: 4686  Z-score: 3028.6  bits: 570.9 E(32554): 2.3e-162
Smith-Waterman score: 4686; 100.0% identity (100.0% similar) in 708 aa overlap (1-708:1-708)

               10        20        30        40        50        60
pF1KSD MAAAGPSTRASSAAAAAALSRRGRRGRCDETAAAKTGAPGPASGPSLLVLSPPLLQPPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAAAGPSTRASSAAAAAALSRRGRRGRCDETAAAKTGAPGPASGPSLLVLSPPLLQPPLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PRPEESGCAGCLEPPGEAAALPCGHSLCRGCAQRAADAAGPGCPRCRARGPGWARRRARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PRPEESGCAGCLEPPGEAAALPCGHSLCRGCAQRAADAAGPGCPRCRARGPGWARRRARD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DGQADSEVLGECARRSQPERCRPRRDGGAAAAGPRPEQEPRAAPAEPDFIFRAPIKLSKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DGQADSEVLGECARRSQPERCRPRRDGGAAAAGPRPEQEPRAAPAEPDFIFRAPIKLSKP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GELREEYESLRKLREEKLQEEKPSEDQIHKLLPEDTETGKRKMDEQKKRDEPLVLKTNLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GELREEYESLRKLREEKLQEEKPSEDQIHKLLPEDTETGKRKMDEQKKRDEPLVLKTNLE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RCPARLSDSENEEPSRGQMTQTHRSAFVSKNNSYSLAFLAGKLNSKVERSQSCSDTAQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RCPARLSDSENEEPSRGQMTQTHRSAFVSKNNSYSLAFLAGKLNSKVERSQSCSDTAQER
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD AKSRVRAVPGNKAKVTTMTPASNPIIGVLLSTQNNRCVSAPDLTIEKRLPFSSLSSLASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AKSRVRAVPGNKAKVTTMTPASNPIIGVLLSTQNNRCVSAPDLTIEKRLPFSSLSSLASL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD HKPERSVSPESNDSISEELNHFKPIVCSPCTPPKRLPDGRVLSPLIIKSTPRNLNRSLQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HKPERSVSPESNDSISEELNHFKPIVCSPCTPPKRLPDGRVLSPLIIKSTPRNLNRSLQK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD QTSYEASPRILKKWEQIFQERQIKKTLSKATLTSLAPEMGEELLGSEGIHSSKEKPLVAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QTSYEASPRILKKWEQIFQERQIKKTLSKATLTSLAPEMGEELLGSEGIHSSKEKPLVAV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NTRLSGGQVLSEYTGPTSADLDHFPSVSQTKAEQDSDNKSSTEIPLETCCSSELKGGGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NTRLSGGQVLSEYTGPTSADLDHFPSVSQTKAEQDSDNKSSTEIPLETCCSSELKGGGSG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TSLEREQFEGLGSTPDAKLDKTCISRAMKITTVNSVLPQNSVLGGVLKTKQQLKTLNHFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TSLEREQFEGLGSTPDAKLDKTCISRAMKITTVNSVLPQNSVLGGVLKTKQQLKTLNHFD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LTNGVLVESLSEEPLPSLRRGRKRHCKTKHLEQNGSLKKLRQTSGEVGLAPTDPVLREME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LTNGVLVESLSEEPLPSLRRGRKRHCKTKHLEQNGSLKKLRQTSGEVGLAPTDPVLREME
              610       620       630       640       650       660

              670       680       690       700        
pF1KSD QKLQQEEEDRQLALQLQRMFDNERRTVSRRKGSVDQYLLRSSNMAGAK
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QKLQQEEEDRQLALQLQRMFDNERRTVSRRKGSVDQYLLRSSNMAGAK
              670       680       690       700        




708 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:55:50 2016 done: Thu Nov  3 07:55:51 2016
 Total Scan time:  3.510 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]