FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA2013, 667 aa
  1>>>pF1KSDA2013 667 - 667 aa - 667 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7304+/-0.000789; mu= 18.8742+/- 0.047
 mean_var=90.9930+/-18.329, 0's: 0 Z-trim(110.6): 12  B-trim: 487 in 1/50
 Lambda= 0.134453
 statistics sampled from 11765 (11769) to 11765 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.362), width:  16
 Scan time:  4.340

The best scores are:                                      opt bits E(32554)
CCDS141.1 KIAA2013 gene_id:90231|Hs108|chr1        ( 634) 4238 832.2       0


>>CCDS141.1 KIAA2013 gene_id:90231|Hs108|chr1             (634 aa)
 initn: 4238 init1: 4238 opt: 4238  Z-score: 4442.2  bits: 832.2 E(32554):    0
Smith-Waterman score: 4238; 100.0% identity (100.0% similar) in 629 aa overlap (1-629:1-629)

               10        20        30        40        50        60
pF1KSD MWLQQRLKGLPGLLSSSWARRLLCLLGLLLLLLWFGGSGARRAAGGLHLLPWSRGEPGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MWLQQRLKGLPGLLSSSWARRLLCLLGLLLLLLWFGGSGARRAAGGLHLLPWSRGEPGAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EPSACLEAATRAWRGLRERGEVVPLGPGVPALVANGFLALDVAANRLWVTPGEREPAVAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EPSACLEAATRAWRGLRERGEVVPLGPGVPALVANGFLALDVAANRLWVTPGEREPAVAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DFVPFVQLRPLSALAEAGEAVLLLREGLLRRVRCLQLGSPGPGPVAAGPGPASVSGLAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DFVPFVQLRPLSALAEAGEAVLLLREGLLRRVRCLQLGSPGPGPVAAGPGPASVSGLAAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SGRDCVLLQEDFLAHRGRPHVYLQRIQLNNPTERVAALQTVGPTAGPAPKAFTSTLEKVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SGRDCVLLQEDFLAHRGRPHVYLQRIQLNNPTERVAALQTVGPTAGPAPKAFTSTLEKVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD DHQFLLYSGRSPPTPTGLVHLVVVAAKKLVNRLQVAPKTQLDETVLWVVHVSGPINPQVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DHQFLLYSGRSPPTPTGLVHLVVVAAKKLVNRLQVAPKTQLDETVLWVVHVSGPINPQVL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD KSKAAKELKALQDLARKEMLELLDMPAAELLQDHQLLWAQLFSPGVEMKKITDTHTPSGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KSKAAKELKALQDLARKEMLELLDMPAAELLQDHQLLWAQLFSPGVEMKKITDTHTPSGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD TVNLTLYYMLSCSPAPLLSPSLSHRERDQMESTLNYEDHCFSGHATMHAENLWPGRLSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TVNLTLYYMLSCSPAPLLSPSLSHRERDQMESTLNYEDHCFSGHATMHAENLWPGRLSSV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD QQILQLSDLWRLTLQKRGCKGLVKVGAPGILQGMVLSFGGLQFTENHLQFQADPDVLHNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QQILQLSDLWRLTLQKRGCKGLVKVGAPGILQGMVLSFGGLQFTENHLQFQADPDVLHNS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD YALHGIRYKNDHINLAVLADAEGKPYLHVSVESRGQPVKIYACKAGCLDEPVELTSAPTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YALHGIRYKNDHINLAVLADAEGKPYLHVSVESRGQPVKIYACKAGCLDEPVELTSAPTG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD HTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPFLFWFSVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPFLFWFSVAS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LITLFHLFLFKLIYNEYCGPGAKPLFRSKVGSRHLVETRGLGLALSPVSRKGLAWRGGVR
       :::::::::::::::::::::::::::::                               
CCDS14 LITLFHLFLFKLIYNEYCGPGAKPLFRSKEDPSV                          
              610       620       630                              




667 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:59:55 2016 done: Thu Nov  3 07:59:56 2016
 Total Scan time:  4.340 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]