(Circular) (Six-base) MAPSORT of: pF1KSDA2038.seq Check: 5655 from: 1 to: 5761 pF1KSDA2038 5761 bp With 182 enzymes: SgfI * June 20, 2008 10:36 .. AccI GT'mk_AC Cuts at: 2797 2797 Size: 5761 Acc65I G'GTAC_C Cuts at: 2775 2775 Size: 5761 AclI AA'CG_TT Cuts at: 5601 5601 Size: 5761 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 417 483 819 2036 2381 3584 4016 4765 5033 Size: 66 336 1217 345 1203 432 749 268 Cuts at: 5033 417 Size: 1145 Fragments arranged by size: 1217 1203 1145 749 432 345 336 268 66 AfeI AGC'GCT Cuts at: 628 1177 1993 628 Size: 549 816 4396 Fragments arranged by size: 4396 816 549 AflIII A'CryG_T Cuts at: 3111 4217 5194 3111 Size: 1106 977 3678 Fragments arranged by size: 3678 1106 977 AgeI A'CCGG_T Cuts at: 4149 4149 Size: 5761 AleI CACnn'nnGTG Cuts at: 1204 1204 Size: 5761 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 2549 2665 2549 Size: 116 5645 AlwNI CAG_nnn'CTG Cuts at: 203 1113 2266 3064 4633 203 Size: 910 1153 798 1569 1331 Fragments arranged by size: 1569 1331 1153 910 798 ApaI G_GGCC'C Cuts at: 350 1054 1439 1884 2075 350 Size: 704 385 445 191 4036 Fragments arranged by size: 4036 704 445 385 191 ApaLI G'TGCA_C Cuts at: 4531 4531 Size: 5761 ApoI r'AATT_y Cuts at: 2763 5114 5370 2763 Size: 2351 256 3154 Fragments arranged by size: 3154 2351 256 AseI AT'TA_AT Cuts at: 20 20 Size: 5761 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 5761 AvaI C'yCGr_G Cuts at: 404 1288 1378 1438 1598 1877 2085 2419 2480 Size: 884 90 60 160 279 208 334 61 Cuts at: 2480 2621 2779 404 Size: 141 158 3386 Fragments arranged by size: 3386 884 334 279 208 160 158 141 90 61 60 BamHI G'GATC_C Cuts at: 2784 2784 Size: 5761 BanI G'GyrC_C Cuts at: 172 739 930 1056 1215 2453 2775 3189 3437 Size: 567 191 126 159 1238 322 414 248 Cuts at: 3437 3472 172 Size: 35 2461 Fragments arranged by size: 2461 1238 567 414 322 248 191 159 126 35 BanII G_rGCy'C Cuts at: 350 578 1054 1229 1295 1360 1385 1439 1469 Size: 228 476 175 66 65 25 54 30 Cuts at: 1469 1884 2013 2075 2225 2291 2594 2773 3803 Size: 415 129 62 150 66 303 179 1030 Cuts at: 3803 350 Size: 2308 Fragments arranged by size: 2308 1030 476 415 303 228 179 175 150 129 66 66 65 62 54 30 25 BbeI G_GCGC'C Cuts at: 176 743 1060 1219 2457 3193 3441 176 Size: 567 317 159 1238 736 248 2496 Fragments arranged by size: 2496 1238 736 567 317 248 159 BbsI GAAGACnn'nnnn_ Cuts at: 453 1241 2057 453 Size: 788 816 4157 Fragments arranged by size: 4157 816 788 BciVI GTATCCnnnnn_n' Cuts at: 3657 4420 5761 3657 Size: 763 1341 3657 Fragments arranged by size: 3657 1341 763 BclI T'GATC_A Cuts at: 3279 3279 Size: 5761 BglI GCCn_nnn'nGGC Cuts at: 148 939 1049 1464 1879 148 Size: 791 110 415 415 4030 Fragments arranged by size: 4030 791 415 415 110 BglII A'GATC_T Cuts at: 2744 3274 5313 2744 Size: 530 2039 3192 Fragments arranged by size: 3192 2039 530 BlpI GC'TnA_GC Cuts at: 2871 2871 Size: 5761 Bme1580I G_kGCm'C Cuts at: 350 935 1054 1439 1884 2075 3384 3477 4535 Size: 585 119 385 445 191 1309 93 1058 Cuts at: 4535 350 Size: 1576 Fragments arranged by size: 1576 1309 1058 585 445 385 191 119 93 BmrI ACTGGGnnnn_n' Cuts at: 1374 2971 3052 3387 5533 1374 Size: 1597 81 335 2146 1602 Fragments arranged by size: 2146 1602 1597 335 81 BmtI G_CTAG'C Cuts at: 1318 1318 Size: 5761 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2583 4126 2583 Size: 1543 4218 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 183 343 874 1514 1571 1611 1671 1699 2239 Size: 160 531 640 57 40 60 28 540 Cuts at: 2239 2243 2578 2754 183 Size: 4 335 176 3190 Fragments arranged by size: 3190 640 540 531 335 176 160 60 57 40 28 4 Bpu10I CC'TnA_GC Cuts at: 805 2267 805 Size: 1462 4299 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2935 3814 4308 4606 2935 Size: 879 494 298 4090 Fragments arranged by size: 4090 879 494 298 BsaI GGTCTCn'nnnn_ Cuts at: 2571 5465 2571 Size: 2894 2867 BsaAI yAC'GTr Cuts at: 1353 2751 3112 1353 Size: 1398 361 4002 Fragments arranged by size: 4002 1398 361 BsaBI GATnn'nnATC Cuts at: 6 358 3273 5312 6 Size: 352 2915 2039 455 Fragments arranged by size: 2915 2039 455 352 BsaHI Gr'CG_yC Cuts at: 173 254 740 1057 1216 2454 3190 3438 4142 Size: 81 486 317 159 1238 736 248 704 Cuts at: 4142 5638 173 Size: 1496 296 Fragments arranged by size: 1496 1238 736 704 486 317 296 248 159 81 BsaWI w'CCGG_w Cuts at: 2948 3469 4149 4423 4570 4981 2948 Size: 521 680 274 147 411 3728 Fragments arranged by size: 3728 680 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 589 619 1144 1174 1180 1210 1462 1492 1753 Size: 30 525 30 6 30 252 30 261 Cuts at: 1753 1783 589 Size: 30 4567 Fragments arranged by size: 4567 525 261 252 30 30 30 30 30 6 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 340 460 1429 1576 1695 1952 2157 2172 2175 Size: 120 969 147 119 257 205 15 3 Cuts at: 2175 2178 2444 2508 2575 340 Size: 3 266 64 67 3526 Fragments arranged by size: 3526 969 266 257 205 147 120 119 67 64 15 3 3 BseYI C'CCAG_C Cuts at: 657 699 934 1026 1681 1830 1864 2127 2241 Size: 42 235 92 655 149 34 263 114 Cuts at: 2241 3184 3942 4521 5017 657 Size: 943 758 579 496 1401 Fragments arranged by size: 1401 943 758 655 579 496 263 235 149 114 92 42 34 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 949 1048 2359 2531 2671 949 Size: 99 1311 172 140 4039 Fragments arranged by size: 4039 1311 172 140 99 BsiEI CG_ry'CG Cuts at: 104 143 943 1205 1456 1620 1905 3301 3347 Size: 39 800 262 251 164 285 1396 46 Cuts at: 3347 4557 104 Size: 1210 1308 Fragments arranged by size: 1396 1308 1210 800 285 262 251 164 46 39 BsiHKAI G_wGCw'C Cuts at: 578 881 1229 2013 2436 2773 3551 3741 4535 Size: 303 348 784 423 337 778 190 794 Cuts at: 4535 578 Size: 1804 Fragments arranged by size: 1804 794 784 778 423 348 337 303 190 Bsp1286I G_dGCh'C Cuts at: 350 578 881 935 1054 1229 1295 1360 1385 Size: 228 303 54 119 175 66 65 25 Cuts at: 1385 1439 1469 1884 2013 2075 2225 2291 2436 Size: 54 30 415 129 62 150 66 145 Cuts at: 2436 2594 2773 3384 3477 3551 3741 3803 4535 Size: 158 179 611 93 74 190 62 732 Cuts at: 4535 350 Size: 1576 Fragments arranged by size: 1576 732 611 415 303 228 190 179 175 158 150 145 129 119 93 74 66 66 65 62 62 54 54 30 25 BspEI T'CCGG_A Cuts at: 4981 4981 Size: 5761 BspHI T'CATG_A Cuts at: 4937 4937 Size: 5761 BspMI ACCTGCnnnn'nnnn_ Cuts at: 971 2691 2809 3023 3325 3706 971 Size: 1720 118 214 302 381 3026 Fragments arranged by size: 3026 1720 381 302 214 118 BsrBI CCG'CTC Cuts at: 50 183 1901 4051 4105 5591 5756 50 Size: 133 1718 2150 54 1486 165 55 Fragments arranged by size: 2150 1718 1486 165 133 55 54 BsrDI GCAATG_nn' Cuts at: 984 1614 3671 984 Size: 630 2057 3074 Fragments arranged by size: 3074 2057 630 BsrFI r'CCGG_y Cuts at: 151 290 747 915 938 1320 1330 1619 1668 Size: 139 457 168 23 382 10 289 49 Cuts at: 1668 3757 3938 4149 151 Size: 2089 181 211 1763 Fragments arranged by size: 2089 1763 457 382 289 211 181 168 139 49 23 10 BsrGI T'GTAC_A Cuts at: 545 545 Size: 5761 BssHII G'CGCG_C Cuts at: 888 1256 1258 1281 888 Size: 368 2 23 5368 Fragments arranged by size: 5368 368 23 2 BssSI C'ACGA_G Cuts at: 4030 4390 4030 Size: 360 5401 BstAPI GCAn_nnn'nTGC Cuts at: 885 972 1071 1113 3136 885 Size: 87 99 42 2023 3510 Fragments arranged by size: 3510 2023 99 87 42 BstBI TT'CG_AA Cuts at: 110 110 Size: 5761 BstXI CCAn_nnnn'nTGG Cuts at: 1020 1793 2298 1020 Size: 773 505 4483 Fragments arranged by size: 4483 773 505 BstYI r'GATC_y Cuts at: 1 599 1403 2744 2784 3251 3274 3609 3855 Size: 598 804 1341 40 467 23 335 246 Cuts at: 3855 4869 4955 4967 5313 1 Size: 1014 86 12 346 449 Fragments arranged by size: 1341 1014 804 598 467 449 346 335 246 86 40 23 12 Bsu36I CC'TnA_GG Cuts at: 2043 2043 Size: 5761 BtgI C'CryG_G Cuts at: 125 716 1199 1490 125 Size: 591 483 291 4396 Fragments arranged by size: 4396 591 483 291 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 1739 3709 3890 4053 1739 Size: 1970 181 163 3447 Fragments arranged by size: 3447 1970 181 163 BtsI GCAGTG_nn' Cuts at: 301 1743 1749 2303 3002 301 Size: 1442 6 554 699 3060 Fragments arranged by size: 3060 1442 699 554 6 ClaI AT'CG_AT Cuts at: 2633 2633 Size: 5761 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 2481 2516 2481 Size: 35 5726 DraI TTT'AAA Cuts at: 2758 2758 Size: 5761 DraIII CAC_nnn'GTG Cuts at: 885 972 885 Size: 87 5674 DrdI GACnn_nn'nnGTC Cuts at: 193 1132 1502 3465 4325 193 Size: 939 370 1963 860 1629 Fragments arranged by size: 1963 1629 939 860 370 EaeI y'GGCC_r Cuts at: 140 149 452 677 940 1118 1202 1453 1617 Size: 9 303 225 263 178 84 251 164 Cuts at: 1617 3344 3518 3909 3936 5283 140 Size: 1727 174 391 27 1347 618 Fragments arranged by size: 1727 1347 618 391 303 263 251 225 178 174 164 84 27 9 EagI C'GGCC_G Cuts at: 140 940 1202 1453 1617 3344 140 Size: 800 262 251 164 1727 2557 Fragments arranged by size: 2557 1727 800 262 251 164 EarI CTCTTCn'nnn_ Cuts at: 2196 3782 3992 2196 Size: 1586 210 3965 Fragments arranged by size: 3965 1586 210 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 610 3967 4279 4425 5571 610 Size: 3357 312 146 1146 800 Fragments arranged by size: 3357 1146 800 312 146 EcoICRI GAG'CTC Cuts at: 576 1227 2011 2771 576 Size: 651 784 760 3566 Fragments arranged by size: 3566 784 760 651 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 183 343 417 483 819 874 1514 1571 1611 Size: 160 74 66 336 55 640 57 40 Cuts at: 1611 1671 1699 2036 2239 2243 2381 2578 2754 Size: 60 28 337 203 4 138 197 176 Cuts at: 2754 3584 4016 4765 5033 183 Size: 830 432 749 268 911 Fragments arranged by size: 911 830 749 640 432 337 336 268 203 197 176 160 138 74 66 60 57 55 40 28 4 EcoNI CCTnn'n_nnAGG Cuts at: 325 397 2560 325 Size: 72 2163 3526 Fragments arranged by size: 3526 2163 72 EcoO109I rG'GnC_Cy Cuts at: 1050 1110 1125 1435 1443 1881 2047 2089 2382 Size: 60 15 310 8 438 166 42 293 Cuts at: 2382 2416 2464 2898 1050 Size: 34 48 434 3913 Fragments arranged by size: 3913 438 434 310 293 166 60 48 42 34 15 8 EcoRI G'AATT_C Cuts at: 2763 2763 Size: 5761 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 3778 3778 Size: 5761 FseI GG_CCGG'CC Cuts at: 155 155 Size: 5761 FspI TGC'GCA Cuts at: 3540 3540 Size: 5761 HaeII r_GCGC'y Cuts at: 176 630 676 743 1039 1060 1143 1160 1179 Size: 454 46 67 296 21 83 17 19 Cuts at: 1179 1219 1321 1522 1995 2457 3193 3441 4465 Size: 40 102 201 473 462 736 248 1024 Cuts at: 4465 5444 176 Size: 979 493 Fragments arranged by size: 1024 979 736 493 473 462 454 296 248 201 102 83 67 46 40 21 19 17 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1144 1176 1180 1212 1462 1494 1753 1785 2503 Size: 32 4 32 250 32 259 32 718 Cuts at: 2503 2535 2615 2647 3601 3631 3633 3663 1144 Size: 32 80 32 954 30 2 30 3242 Fragments arranged by size: 3242 954 718 259 250 80 32 32 32 32 32 32 30 30 4 2 HincII GTy'rAC Cuts at: 2798 2798 Size: 5761 KasI G'GCGC_C Cuts at: 172 739 1056 1215 2453 3189 3437 172 Size: 567 317 159 1238 736 248 2496 Fragments arranged by size: 2496 1238 736 567 317 248 159 KpnI G_GTAC'C Cuts at: 2779 2779 Size: 5761 MluI A'CGCG_T Cuts at: 5194 5194 Size: 5761 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 4432 4616 4432 Size: 184 5577 MscI TGG'CCA Cuts at: 454 3520 454 Size: 3066 2695 MslI CAynn'nnrTG Cuts at: 478 583 778 1204 2647 3748 3875 478 Size: 105 195 426 1443 1101 127 2364 Fragments arranged by size: 2364 1443 1101 426 195 127 105 MspA1I CmG'CkG Cuts at: 203 718 852 1062 1222 1492 1616 1955 2056 Size: 515 134 210 160 270 124 339 101 Cuts at: 2056 2155 2404 2870 3184 3544 4559 4804 203 Size: 99 249 466 314 360 1015 245 1160 Fragments arranged by size: 1160 1015 515 466 360 339 314 270 249 245 210 160 134 124 101 99 NaeI GCC'GGC Cuts at: 153 292 940 1322 1332 1621 3940 153 Size: 139 648 382 10 289 2319 1974 Fragments arranged by size: 2319 1974 648 382 289 139 10 NarI GG'CG_CC Cuts at: 173 740 1057 1216 2454 3190 3438 173 Size: 567 317 159 1238 736 248 2496 Fragments arranged by size: 2496 1238 736 567 317 248 159 NcoI C'CATG_G Cuts at: 125 125 Size: 5761 NgoMIV G'CCGG_C Cuts at: 151 290 938 1320 1330 1619 3938 151 Size: 139 648 382 10 289 2319 1974 Fragments arranged by size: 2319 1974 648 382 289 139 10 NheI G'CTAG_C Cuts at: 1314 1314 Size: 5761 NruI TCG'CGA Cuts at: 4122 4122 Size: 5761 NspI r_CATG'y Cuts at: 565 2812 3312 4221 565 Size: 2247 500 909 2105 Fragments arranged by size: 2247 2105 909 500 PasI CC'CwG_GG Cuts at: 376 1462 376 Size: 1086 4675 PciI A'CATG_T Cuts at: 4217 4217 Size: 5761 PfoI T'CCnGG_A Cuts at: 392 1715 2216 392 Size: 1323 501 3937 Fragments arranged by size: 3937 1323 501 PmeI GTTT'AAAC Cuts at: 2758 2758 Size: 5761 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4900 4932 4900 Size: 32 5729 PpuMI rG'GwC_Cy Cuts at: 1125 2089 2382 2416 1125 Size: 964 293 34 4470 Fragments arranged by size: 4470 964 293 34 PspOMI G'GGCC_C Cuts at: 346 1050 1435 1880 2071 346 Size: 704 385 445 191 4036 Fragments arranged by size: 4036 704 445 385 191 PstI C_TGCA'G Cuts at: 371 863 1667 2414 2702 2806 3491 371 Size: 492 804 747 288 104 685 2641 Fragments arranged by size: 2641 804 747 685 492 288 104 PvuI CG_AT'CG Cuts at: 104 104 Size: 5761 PvuII CAG'CTG Cuts at: 1955 2155 2404 3184 3544 1955 Size: 200 249 780 360 4172 Fragments arranged by size: 4172 780 360 249 200 RsrII CG'GwC_CG Cuts at: 3954 3954 Size: 5761 SacI G_AGCT'C Cuts at: 578 1229 2013 2773 578 Size: 651 784 760 3566 Fragments arranged by size: 3566 784 760 651 SacII CC_GC'GG Cuts at: 719 1493 719 Size: 774 4987 SalI G'TCGA_C Cuts at: 2796 2796 Size: 5761 SanDI GG'GwC_CC Cuts at: 1125 2416 1125 Size: 1291 4470 SapI GCTCTTCn'nnn_ Cuts at: 3782 3992 3782 Size: 210 5551 SbfI CC_TGCA'GG Cuts at: 2806 2806 Size: 5761 ScaI AGT'ACT Cuts at: 1195 5278 1195 Size: 4083 1678 SexAI A'CCwGG_T Cuts at: 2378 2378 Size: 5761 SfcI C'TryA_G Cuts at: 33 367 859 1663 2410 2698 2802 3487 4482 Size: 334 492 804 747 288 104 685 995 Cuts at: 4482 4673 33 Size: 191 1121 Fragments arranged by size: 1121 995 804 747 685 492 334 288 191 104 SfiI GGCCn_nnn'nGGCC Cuts at: 148 1879 148 Size: 1731 4030 SfoI GGC'GCC Cuts at: 174 741 1058 1217 2455 3191 3439 174 Size: 567 317 159 1238 736 248 2496 Fragments arranged by size: 2496 1238 736 567 317 248 159 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 5761 SgrAI Cr'CCGG_yG Cuts at: 1330 1330 Size: 5761 SmaI CCC'GGG Cuts at: 406 1290 1600 1879 2482 2781 406 Size: 884 310 279 603 299 3386 Fragments arranged by size: 3386 884 603 310 299 279 SmlI C'TyrA_G Cuts at: 2914 3829 4323 4585 2914 Size: 915 494 262 4090 Fragments arranged by size: 4090 915 494 262 SnaBI TAC'GTA Cuts at: 2751 2751 Size: 5761 SpeI A'CTAG_T Cuts at: 67 67 Size: 5761 SphI G_CATG'C Cuts at: 565 2812 3312 565 Size: 2247 500 3014 Fragments arranged by size: 3014 2247 500 StuI AGG'CCT Cuts at: 1873 2146 2350 1873 Size: 273 204 5284 Fragments arranged by size: 5284 273 204 StyI C'CwwG_G Cuts at: 125 228 620 2345 2448 2893 3247 125 Size: 103 392 1725 103 445 354 2639 Fragments arranged by size: 2639 1725 445 392 354 103 103 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 3342 3475 3934 4145 3342 Size: 133 459 211 4958 Fragments arranged by size: 4958 459 211 133 TatI w'GTAC_w Cuts at: 545 1193 5276 545 Size: 648 4083 1030 Fragments arranged by size: 4083 1030 648 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 589 621 2073 2105 5278 5310 589 Size: 32 1452 32 3173 32 1040 Fragments arranged by size: 3173 1452 1040 32 32 32 Tth111I GACn'n_nGTC Cuts at: 3556 3556 Size: 5761 XbaI T'CTAG_A Cuts at: 2790 2790 Size: 5761 XcmI CCAnnnn_n'nnnnTGG Cuts at: 132 3254 132 Size: 3122 2639 XmaI C'CCGG_G Cuts at: 404 1288 1598 1877 2480 2779 404 Size: 884 310 279 603 299 3386 Fragments arranged by size: 3386 884 603 310 299 279 Enzymes that do cut: AccI Acc65I AclI AcuI AfeI AflIII AgeI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BciVI BclI BglI BglII BlpI Bme1580I BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FseI FspI HaeII Hin4I HincII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NheI NruI NspI PasI PciI PfoI PmeI PpiI PpuMI PspOMI PstI PvuI PvuII RsrII SacI SacII SalI SanDI SapI SbfI ScaI SexAI SfcI SfiI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI Enzymes that do not cut: AarI AatII AflII AhdI AloI AscI AvrII BaeI BbvCI BcgI BfrBI BmgBI BsiWI BsmI BsmBI BstEII BstZ17I EcoRV FspAI HindIII HpaI MfeI NdeI NotI NsiI PacI PflMI PmlI PshAI PsiI PspXI PsrI SrfI SspI SwaI XhoI XmnI ZraI