FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDB0008, 631 aa
  1>>>pF1KSDB0008 631 - 631 aa - 631 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1948+/-0.00123; mu= 7.7950+/- 0.073
 mean_var=254.7521+/-51.403, 0's: 0 Z-trim(107.1): 83  B-trim: 50 in 1/54
 Lambda= 0.080355
 statistics sampled from 9325 (9381) to 9325 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.288), width:  16
 Scan time:  3.650

The best scores are:                                      opt bits E(32554)
CCDS2121.2 CCDC93 gene_id:54520|Hs108|chr2         ( 631) 4008 478.8 9.3e-135


>>CCDS2121.2 CCDC93 gene_id:54520|Hs108|chr2              (631 aa)
 initn: 4008 init1: 4008 opt: 4008  Z-score: 2532.8  bits: 478.8 E(32554): 9.3e-135
Smith-Waterman score: 4008; 99.8% identity (99.8% similar) in 631 aa overlap (1-631:1-631)

               10        20        30        40        50        60
pF1KSD MGLPRGPEGQGLPEVETREDEEQNVKLTEILELLVAAGYFRARIKGLSPFDKVVGGMTWC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MGLPRGPEGQGLPEVETREDEEQNVKLTEILELLVAAGYFRARIKGLSPFDKVVGGMTWC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ITTCNFDVDVDLLFQENSTIGQKIALSEKIVSVLPRMKCPHQLEPHQIQGMDFIHIFPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 ITTCNFDVDVDLLFQENSTIGQKIALSEKIVSVLPRMKCPHQLEPHQIQGMDFIHIFPVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QWLVKRAIETKEEMGDYIRSYSVSQFQKTYSLPEDDDFIKRKEKAIKTVVDLSEVYKPCR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS21 QWLVKRAIETKEEMGDYIRSYSVSQFQKTYSLPEDDDFIKRKEKAIKTVVDLSEVYKPRR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KYKRHQGAEELLDEESRIHATLLEYGRRYGFSRQSKMEKAEDKKTALPAGLSATEKADAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 KYKRHQGAEELLDEESRIHATLLEYGRRYGFSRQSKMEKAEDKKTALPAGLSATEKADAH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EEDELRAAEEQRIQSLMTKMTAMANEESRLTASSVGQIVGLCSAEIKQIVSEYAEKQSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 EEDELRAAEEQRIQSLMTKMTAMANEESRLTASSVGQIVGLCSAEIKQIVSEYAEKQSEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SAEESPEKLGTSQLHRRKVISLNKQIAQKTKHLEELRASHTSLQARYNEAKKTLTELKTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 SAEESPEKLGTSQLHRRKVISLNKQIAQKTKHLEELRASHTSLQARYNEAKKTLTELKTY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SEKLDKEQAALEKIESKADPSILQNLRALVAMNENLKSQEQEFKAHCREEMTRLQQEIEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 SEKLDKEQAALEKIESKADPSILQNLRALVAMNENLKSQEQEFKAHCREEMTRLQQEIEN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LKAERAPRGDEKTLSSGEPPGTLTSAMTHDEDLDRRYNMEKEKLYKIRLLQARRNREIAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 LKAERAPRGDEKTLSSGEPPGTLTSAMTHDEDLDRRYNMEKEKLYKIRLLQARRNREIAI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD LHRKIDEVPSRAELIQYQKRFIELYRQISAVHKETKQFFTLYNTLDDKKVYLEKEISLLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 LHRKIDEVPSRAELIQYQKRFIELYRQISAVHKETKQFFTLYNTLDDKKVYLEKEISLLN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SIHENFSQAMASPAARDQFLRQMEQIVEGIKQSRMKMEKKKQENKMRRDQLNDQYLELLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 SIHENFSQAMASPAARDQFLRQMEQIVEGIKQSRMKMEKKKQENKMRRDQLNDQYLELLE
              550       560       570       580       590       600

              610       620       630 
pF1KSD KQRLYFKTVKEFKEEGRKNEMLLSKVKAKAS
       :::::::::::::::::::::::::::::::
CCDS21 KQRLYFKTVKEFKEEGRKNEMLLSKVKAKAS
              610       620       630 




631 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:04:13 2016 done: Thu Nov  3 08:04:14 2016
 Total Scan time:  3.650 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]