FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDB0012, 477 aa
  1>>>pF1KSDB0012 477 - 477 aa - 477 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7860+/-0.000941; mu= 2.5739+/- 0.057
 mean_var=177.6501+/-35.538, 0's: 0 Z-trim(112.3): 12  B-trim: 0 in 0/52
 Lambda= 0.096226
 statistics sampled from 13092 (13096) to 13092 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.402), width:  16
 Scan time:  3.550

The best scores are:                                      opt bits E(32554)
CCDS3886.1 ZNF622 gene_id:90441|Hs108|chr5         ( 477) 3214 458.2 8.4e-129


>>CCDS3886.1 ZNF622 gene_id:90441|Hs108|chr5              (477 aa)
 initn: 3214 init1: 3214 opt: 3214  Z-score: 2425.9  bits: 458.2 E(32554): 8.4e-129
Smith-Waterman score: 3214; 100.0% identity (100.0% similar) in 477 aa overlap (1-477:1-477)

               10        20        30        40        50        60
pF1KSD MATYTCITCRVAFRDADMQRAHYKTDWHRYNLRRKVASMAPVTAEGFQERVRAQRAVAEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MATYTCITCRVAFRDADMQRAHYKTDWHRYNLRRKVASMAPVTAEGFQERVRAQRAVAEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ESKGSATYCTVCSKKFASFNAYENHLKSRRHVELEKKAVQAVNRKVEMMNEKNLEKGLGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 ESKGSATYCTVCSKKFASFNAYENHLKSRRHVELEKKAVQAVNRKVEMMNEKNLEKGLGV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DSVDKDAMNAAIQQAIKAQPSMSPKKAPPAPAKEARNVVAVGTGGRGTHDRDPSEKPPRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 DSVDKDAMNAAIQQAIKAQPSMSPKKAPPAPAKEARNVVAVGTGGRGTHDRDPSEKPPRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QWFEQQAKKLAKQQEEDSEEEEEDLDGDDWEDIDSDEELECEDTEAMDDVVEQDAEEEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 QWFEQQAKKLAKQQEEDSEEEEEDLDGDDWEDIDSDEELECEDTEAMDDVVEQDAEEEEA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EEGPPLGAIPITDCLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 EEGPPLGAIPITDCLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VGKICLWCNEKGKSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDHKEGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 VGKICLWCNEKGKSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDHKEGE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD DPNKAEELPSEKNLEYDDETMELILPSGARVGHRSLMRYYKQRFGLSRAVAVAKNRKAVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 DPNKAEELPSEKNLEYDDETMELILPSGARVGHRSLMRYYKQRFGLSRAVAVAKNRKAVG
              370       380       390       400       410       420

              430       440       450       460       470       
pF1KSD RVLQQYRALGWTGSTGAALMRERDMQYVQRMKSKWMLKTGMKNNATKQMHFRVQVRF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 RVLQQYRALGWTGSTGAALMRERDMQYVQRMKSKWMLKTGMKNNATKQMHFRVQVRF
              430       440       450       460       470       




477 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:05:26 2016 done: Thu Nov  3 08:05:27 2016
 Total Scan time:  3.550 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]