FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDB0012, 477 aa
  1>>>pF1KSDB0012 477 - 477 aa - 477 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7770+/-0.000368; mu= 8.5986+/- 0.023
 mean_var=187.6281+/-37.333, 0's: 0 Z-trim(119.8): 37  B-trim: 0 in 0/52
 Lambda= 0.093632
 statistics sampled from 34246 (34283) to 34246 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.402), width:  16
 Scan time:  9.670

The best scores are:                                      opt bits E(85289)
NP_219482 (OMIM: 608694) zinc finger protein 622 [ ( 477) 3214 446.5 7.8e-125


>>NP_219482 (OMIM: 608694) zinc finger protein 622 [Homo  (477 aa)
 initn: 3214 init1: 3214 opt: 3214  Z-score: 2362.2  bits: 446.5 E(85289): 7.8e-125
Smith-Waterman score: 3214; 100.0% identity (100.0% similar) in 477 aa overlap (1-477:1-477)

               10        20        30        40        50        60
pF1KSD MATYTCITCRVAFRDADMQRAHYKTDWHRYNLRRKVASMAPVTAEGFQERVRAQRAVAEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 MATYTCITCRVAFRDADMQRAHYKTDWHRYNLRRKVASMAPVTAEGFQERVRAQRAVAEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ESKGSATYCTVCSKKFASFNAYENHLKSRRHVELEKKAVQAVNRKVEMMNEKNLEKGLGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 ESKGSATYCTVCSKKFASFNAYENHLKSRRHVELEKKAVQAVNRKVEMMNEKNLEKGLGV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DSVDKDAMNAAIQQAIKAQPSMSPKKAPPAPAKEARNVVAVGTGGRGTHDRDPSEKPPRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 DSVDKDAMNAAIQQAIKAQPSMSPKKAPPAPAKEARNVVAVGTGGRGTHDRDPSEKPPRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QWFEQQAKKLAKQQEEDSEEEEEDLDGDDWEDIDSDEELECEDTEAMDDVVEQDAEEEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 QWFEQQAKKLAKQQEEDSEEEEEDLDGDDWEDIDSDEELECEDTEAMDDVVEQDAEEEEA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EEGPPLGAIPITDCLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 EEGPPLGAIPITDCLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VGKICLWCNEKGKSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDHKEGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 VGKICLWCNEKGKSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDHKEGE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD DPNKAEELPSEKNLEYDDETMELILPSGARVGHRSLMRYYKQRFGLSRAVAVAKNRKAVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 DPNKAEELPSEKNLEYDDETMELILPSGARVGHRSLMRYYKQRFGLSRAVAVAKNRKAVG
              370       380       390       400       410       420

              430       440       450       460       470       
pF1KSD RVLQQYRALGWTGSTGAALMRERDMQYVQRMKSKWMLKTGMKNNATKQMHFRVQVRF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_219 RVLQQYRALGWTGSTGAALMRERDMQYVQRMKSKWMLKTGMKNNATKQMHFRVQVRF
              430       440       450       460       470       




477 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:05:27 2016 done: Thu Nov  3 08:05:28 2016
 Total Scan time:  9.670 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]