FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDB0021, 327 aa
  1>>>pF1KSDB0021 327 - 327 aa - 327 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4962+/-0.000337; mu= -5.1153+/- 0.021
 mean_var=369.4118+/-74.180, 0's: 0 Z-trim(126.1): 3  B-trim: 39 in 1/57
 Lambda= 0.066730
 statistics sampled from 51407 (51412) to 51407 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.85), E-opt: 0.2 (0.603), width:  16
 Scan time:  8.320

The best scores are:                                      opt bits E(85289)
NP_057629 (OMIM: 607177) immediate early response  ( 327) 2321 236.4 6.5e-62


>>NP_057629 (OMIM: 607177) immediate early response gene  (327 aa)
 initn: 2321 init1: 2321 opt: 2321  Z-score: 1232.6  bits: 236.4 E(85289): 6.5e-62
Smith-Waterman score: 2321; 99.7% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KSD MEFKLEAHRIVSISLGKIYNSRVQRGGIKLHKNLLVSLVLRSARQVYLSDPCPGLYLAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MEFKLEAHRIVSISLGKIYNSRVQRGGIKLHKNLLVSLVLRSARQVYLSDPCPGLYLAGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD AGTPAPPPQQQPGEPAAGPPAGWGEPPPPAARASWPETEPQPERSSVSDAPRVGDEVPVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AGTPAPPPQQQPGEPAAGPPAGWGEPPPPAARASWPETEPQPERSSVSDAPRVGDEVPVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD TVTGVGDVFQGGEADATEAAWSRVEGPRQAAAREAEGTAGGWGVFPEVSRAARRPCGCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TVTGVGDVFQGGEADATEAAWSRVEGPRQAAAREAEGTAGGWGVFPEVSRAARRPCGCPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GGEDPPGTPAATPRAACCCAPRPAEDEPPAPPAVCPRKRCAAGVGGGPAGCPAPGSTPLK
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
NP_057 GGEDPPGTPAATPRAACCCAPQPAEDEPPAPPAVCPRKRCAAGVGGGPAGCPAPGSTPLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KPRRNLEQPPSGGEDDDAEEMETGNVANLISIFGSSFSGLLRKSPGGGREEEEGEESGPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KPRRNLEQPPSGGEDDDAEEMETGNVANLISIFGSSFSGLLRKSPGGGREEEEGEESGPE
              250       260       270       280       290       300

              310       320       
pF1KSD AAEPGQICCDKPVLRDMNPWSTAIVAF
       :::::::::::::::::::::::::::
NP_057 AAEPGQICCDKPVLRDMNPWSTAIVAF
              310       320       




327 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:06:54 2016 done: Thu Nov  3 08:06:55 2016
 Total Scan time:  8.320 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]