Result of FASTA (omim) for
pF1KSDB0032
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDB0032, 479 aa
1>>>pF1KSDB0032 479 - 479 aa - 479 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8222+/-0.000324; mu= 11.4081+/- 0.020
mean_var=109.3659+/-22.760, 0's: 0 Z-trim(118.6): 76 B-trim: 1668 in 1/52
Lambda= 0.122640
statistics sampled from 31595 (31692) to 31595 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.372), width: 16
Scan time: 10.710
The best scores are: opt bits E(85289)
NP_055208 (OMIM: 605920) double-stranded RNA-bindi ( 479) 3155 568.8 1.1e-161
NP_001157856 (OMIM: 605920) double-stranded RNA-bi ( 479) 3155 568.8 1.1e-161
NP_001157853 (OMIM: 605920) double-stranded RNA-bi ( 538) 3150 568.0 2.3e-161
NP_001157857 (OMIM: 605920) double-stranded RNA-bi ( 473) 3117 562.1 1.2e-159
NP_001157852 (OMIM: 605920) double-stranded RNA-bi ( 570) 3115 561.8 1.8e-159
NP_001157854 (OMIM: 605920) double-stranded RNA-bi ( 504) 2697 487.8 3e-137
NP_001157855 (OMIM: 605920) double-stranded RNA-bi ( 398) 2203 400.3 5e-111
NP_059347 (OMIM: 601716) double-stranded RNA-bindi ( 577) 1203 223.5 1.2e-57
NP_001309858 (OMIM: 601716) double-stranded RNA-bi ( 577) 1203 223.5 1.2e-57
NP_001309859 (OMIM: 601716) double-stranded RNA-bi ( 577) 1203 223.5 1.2e-57
NP_001306064 (OMIM: 601716) double-stranded RNA-bi ( 577) 1203 223.5 1.2e-57
XP_016883517 (OMIM: 601716) PREDICTED: double-stra ( 536) 1187 220.6 8.3e-57
NP_001309860 (OMIM: 601716) double-stranded RNA-bi ( 536) 1187 220.6 8.3e-57
NP_001309861 (OMIM: 601716) double-stranded RNA-bi ( 583) 1181 219.6 1.9e-56
NP_001309862 (OMIM: 601716) double-stranded RNA-bi ( 583) 1181 219.6 1.9e-56
XP_006723928 (OMIM: 601716) PREDICTED: double-stra ( 583) 1181 219.6 1.9e-56
NP_001309857 (OMIM: 601716) double-stranded RNA-bi ( 542) 1165 216.8 1.2e-55
XP_011527317 (OMIM: 601716) PREDICTED: double-stra ( 542) 1165 216.8 1.2e-55
NP_004593 (OMIM: 601716) double-stranded RNA-bindi ( 496) 1130 210.5 8.5e-54
NP_059346 (OMIM: 601716) double-stranded RNA-bindi ( 496) 1130 210.5 8.5e-54
NP_059348 (OMIM: 601716) double-stranded RNA-bindi ( 496) 1130 210.5 8.5e-54
NP_001032405 (OMIM: 601716) double-stranded RNA-bi ( 502) 1108 206.7 1.3e-52
NP_001306063 (OMIM: 601716) double-stranded RNA-bi ( 502) 1108 206.7 1.3e-52
XP_005260584 (OMIM: 601716) PREDICTED: double-stra ( 502) 1108 206.7 1.3e-52
NP_001309856 (OMIM: 601716) double-stranded RNA-bi ( 502) 1108 206.7 1.3e-52
NP_001132990 (OMIM: 603424,612067) interferon-indu ( 288) 254 55.4 2.4e-07
NP_001132989 (OMIM: 603424,612067) interferon-indu ( 302) 254 55.4 2.5e-07
NP_003681 (OMIM: 603424,612067) interferon-inducib ( 313) 254 55.4 2.6e-07
>>NP_055208 (OMIM: 605920) double-stranded RNA-binding p (479 aa)
initn: 3155 init1: 3155 opt: 3155 Z-score: 3023.4 bits: 568.8 E(85289): 1.1e-161
Smith-Waterman score: 3155; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:1-479)
10 20 30 40 50 60
pF1KSD MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD KKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSER
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQLEKTGENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQLEKTGENK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSPKDMNQPSSSFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSPKDMNQPSSSFF
370 380 390 400 410 420
430 440 450 460 470
pF1KSD SISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLEYLARIQGFQV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLEYLARIQGFQV
430 440 450 460 470
>>NP_001157856 (OMIM: 605920) double-stranded RNA-bindin (479 aa)
initn: 3155 init1: 3155 opt: 3155 Z-score: 3023.4 bits: 568.8 E(85289): 1.1e-161
Smith-Waterman score: 3155; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:1-479)
10 20 30 40 50 60
pF1KSD MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD KKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSER
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQLEKTGENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQLEKTGENK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSPKDMNQPSSSFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSPKDMNQPSSSFF
370 380 390 400 410 420
430 440 450 460 470
pF1KSD SISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLEYLARIQGFQV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLEYLARIQGFQV
430 440 450 460 470
>>NP_001157853 (OMIM: 605920) double-stranded RNA-bindin (538 aa)
initn: 3150 init1: 3150 opt: 3150 Z-score: 3017.9 bits: 568.0 E(85289): 2.3e-161
Smith-Waterman score: 3150; 100.0% identity (100.0% similar) in 478 aa overlap (1-478:1-478)
10 20 30 40 50 60
pF1KSD MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD KKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSER
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQLEKTGENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQLEKTGENK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSPKDMNQPSSSFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSPKDMNQPSSSFF
370 380 390 400 410 420
430 440 450 460 470
pF1KSD SISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLEYLARIQGFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLEYLARIQGFQAA
430 440 450 460 470 480
NP_001 LSALKQFSEQGLDPIDGAMNIEKGSLEKQAKHLREKADNNQAPPGSIAQDCKKSNSAV
490 500 510 520 530
>>NP_001157857 (OMIM: 605920) double-stranded RNA-bindin (473 aa)
initn: 3117 init1: 3117 opt: 3117 Z-score: 2987.2 bits: 562.1 E(85289): 1.2e-159
Smith-Waterman score: 3117; 100.0% identity (100.0% similar) in 473 aa overlap (7-479:1-473)
10 20 30 40 50 60
pF1KSD MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
10 20 30 40 50
70 80 90 100 110 120
pF1KSD SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD KKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSER
240 250 260 270 280 290
310 320 330 340 350 360
pF1KSD GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQLEKTGENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQLEKTGENK
300 310 320 330 340 350
370 380 390 400 410 420
pF1KSD GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSPKDMNQPSSSFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSPKDMNQPSSSFF
360 370 380 390 400 410
430 440 450 460 470
pF1KSD SISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLEYLARIQGFQV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLEYLARIQGFQV
420 430 440 450 460 470
>>NP_001157852 (OMIM: 605920) double-stranded RNA-bindin (570 aa)
initn: 3115 init1: 3115 opt: 3115 Z-score: 2984.0 bits: 561.8 E(85289): 1.8e-159
Smith-Waterman score: 3115; 99.6% identity (100.0% similar) in 474 aa overlap (5-478:37-510)
10 20 30
pF1KSD MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVA
..::::::::::::::::::::::::::::
NP_001 KTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVA
10 20 30 40 50 60
40 50 60 70 80 90
pF1KSD NKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRA
70 80 90 100 110 120
100 110 120 130 140 150
pF1KSD NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE
130 140 150 160 170 180
160 170 180 190 200 210
pF1KSD RSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVG
190 200 210 220 230 240
220 230 240 250 260 270
pF1KSD EFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGM
250 260 270 280 290 300
280 290 300 310 320 330
pF1KSD NPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAA
310 320 330 340 350 360
340 350 360 370 380 390
pF1KSD EAMLLQLGYKASTNLQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAMLLQLGYKASTNLQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEAS
370 380 390 400 410 420
400 410 420 430 440 450
pF1KSD RHKVISGTTLGYLSPKDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RHKVISGTTLGYLSPKDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSS
430 440 450 460 470 480
460 470
pF1KSD PTPPCSPVQPSKQLEYLARIQGFQV
::::::::::::::::::::::::
NP_001 PTPPCSPVQPSKQLEYLARIQGFQAALSALKQFSEQGLDPIDGAMNIEKGSLEKQAKHLR
490 500 510 520 530 540
>>NP_001157854 (OMIM: 605920) double-stranded RNA-bindin (504 aa)
initn: 2697 init1: 2697 opt: 2697 Z-score: 2585.1 bits: 487.8 E(85289): 3e-137
Smith-Waterman score: 2697; 100.0% identity (100.0% similar) in 407 aa overlap (73-479:1-407)
50 60 70 80 90 100
pF1KSD LPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMY
::::::::::::::::::::::::::::::
NP_001 MKRGEPAIYRPLDPKPFPNYRANYNFRGMY
10 20 30
110 120 130 140 150 160
pF1KSD NQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGES
40 50 60 70 80 90
170 180 190 200 210 220
pF1KSD GKDVDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKDVDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEG
100 110 120 130 140 150
230 240 250 260 270 280
pF1KSD NSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQ
160 170 180 190 200 210
290 300 310 320 330 340
pF1KSD IQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLG
220 230 240 250 260 270
350 360 370 380 390 400
pF1KSD YKASTNLQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YKASTNLQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGT
280 290 300 310 320 330
410 420 430 440 450 460
pF1KSD TLGYLSPKDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLGYLSPKDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPV
340 350 360 370 380 390
470
pF1KSD QPSKQLEYLARIQGFQV
:::::::::::::::::
NP_001 QPSKQLEYLARIQGFQVHYCDRQSGKECVTCLTLAPVQMTFHAIGSSIEASHDQAALSAL
400 410 420 430 440 450
>>NP_001157855 (OMIM: 605920) double-stranded RNA-bindin (398 aa)
initn: 2203 init1: 2203 opt: 2203 Z-score: 2114.3 bits: 400.3 E(85289): 5e-111
Smith-Waterman score: 2203; 100.0% identity (100.0% similar) in 338 aa overlap (141-478:1-338)
120 130 140 150 160 170
pF1KSD PKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDK
::::::::::::::::::::::::::::::
NP_001 MKALQALQNEPIPERSPQNGESGKDVDDDK
10 20 30
180 190 200 210 220 230
pF1KSD DANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKK
40 50 60 70 80 90
240 250 260 270 280 290
pF1KSD RAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEK
100 110 120 130 140 150
300 310 320 330 340 350
pF1KSD EPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQ
160 170 180 190 200 210
360 370 380 390 400 410
pF1KSD DQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSPK
220 230 240 250 260 270
420 430 440 450 460 470
pF1KSD DMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLEY
280 290 300 310 320 330
pF1KSD LARIQGFQV
::::::::
NP_001 LARIQGFQAALSALKQFSEQGLDPIDGAMNIEKGSLEKQAKHLREKADNNQAPPGSIAQD
340 350 360 370 380 390
>>NP_059347 (OMIM: 601716) double-stranded RNA-binding p (577 aa)
initn: 664 init1: 530 opt: 1203 Z-score: 1155.7 bits: 223.5 E(85289): 1.2e-57
Smith-Waterman score: 1349; 49.3% identity (72.9% similar) in 513 aa overlap (7-479:1-504)
10 20 30 40 50
pF1KSD MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKAL-----TESTLP-----KPVQKP
: .::... . . ::.: . .:.. .. : : :.:: .:.:.
NP_059 MSQVQVQVQNPSAALSGSQILNKNQSLLSQPLMSIPSTTSSLPSENAGRPIQNS
10 20 30 40 50
60 70 80 90 100
pF1KSD --PKSNVNNNPG---SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRG-MYNQ
:....... . :::::::::.: :: :. .:.:.:: . :::.:: :
NP_059 ALPSASITSTSAAAESITPTVELNALCMKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPP
60 70 80 90 100 110
110 120 130 140 150 160
pF1KSD RYH--CPVPKIFY-VQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGE
:: ::: ..: :.:.::...: :.:::::::.:.:: :::. :::::.::: ::.
NP_059 RYFYPFPVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGR
120 130 140 150 160 170
170 180 190 200 210 220
pF1KSD SGKDVDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGE
. .... :::::: :::::::::.::.::: .::::::::.:::.:::::: .:::
NP_059 ES----EEENLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGE
180 190 200 210 220 230
230 240 250 260 270
pF1KSD GNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVK--AGPEYGQGMNPISR
:.:::.::: :: .::.:::::::::.::. : .::. : ::: ..::::::.:::::
NP_059 GKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISR
240 250 260 270 280 290
280 290 300 310 320 330
pF1KSD LAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLL
:::::::::::::.:.::.:::.::::::::::::::..: ::: :::.::.:::: ::
NP_059 LAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLE
300 310 320 330 340 350
340 350 360 370 380 390
pF1KSD QLGYKA------STNLQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEA
::.:. . :... ::: .: .: : : :: .. .: . . : ..
NP_059 ILGFKVPQAQPTKPALKSE-EKTPIKKPGDGRKVTFFEPGSGDENGTSN-KEDEFRMPYL
360 370 380 390 400
400 410 420 430 440
pF1KSD SRHKVISGTTLGYLSPK-------DMNQPSSSFFSISPT---SNSSATIARELLMNGTSS
:.... .: . . :. .... ...: .:. .. .: ::::::..:::
NP_059 SHQQLPAG--ILPMVPEVAQAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSP
410 420 430 440 450 460
450 460 470
pF1KSD TAEAIGLKG--SSPTPPCSPV-QPSKQLEYLARIQGFQV
:::.: ::. :: : .:. .::.::.::.:.:::::
NP_059 TAETI-LKNNISSGHVPHGPLTRPSEQLDYLSRVQGFQVEYKDFPKNNKNEFVSLINCSS
470 480 490 500 510 520
NP_059 QPPLISHGIGKDVESCHDMAALNILKLLSELDQQSTEMPRTGNGPMSVCGRC
530 540 550 560 570
>>NP_001309858 (OMIM: 601716) double-stranded RNA-bindin (577 aa)
initn: 664 init1: 530 opt: 1203 Z-score: 1155.7 bits: 223.5 E(85289): 1.2e-57
Smith-Waterman score: 1349; 49.3% identity (72.9% similar) in 513 aa overlap (7-479:1-504)
10 20 30 40 50
pF1KSD MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKAL-----TESTLP-----KPVQKP
: .::... . . ::.: . .:.. .. : : :.:: .:.:.
NP_001 MSQVQVQVQNPSAALSGSQILNKNQSLLSQPLMSIPSTTSSLPSENAGRPIQNS
10 20 30 40 50
60 70 80 90 100
pF1KSD --PKSNVNNNPG---SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRG-MYNQ
:....... . :::::::::.: :: :. .:.:.:: . :::.:: :
NP_001 ALPSASITSTSAAAESITPTVELNALCMKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPP
60 70 80 90 100 110
110 120 130 140 150 160
pF1KSD RYH--CPVPKIFY-VQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGE
:: ::: ..: :.:.::...: :.:::::::.:.:: :::. :::::.::: ::.
NP_001 RYFYPFPVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGR
120 130 140 150 160 170
170 180 190 200 210 220
pF1KSD SGKDVDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGE
. .... :::::: :::::::::.::.::: .::::::::.:::.:::::: .:::
NP_001 ES----EEENLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGE
180 190 200 210 220 230
230 240 250 260 270
pF1KSD GNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVK--AGPEYGQGMNPISR
:.:::.::: :: .::.:::::::::.::. : .::. : ::: ..::::::.:::::
NP_001 GKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISR
240 250 260 270 280 290
280 290 300 310 320 330
pF1KSD LAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLL
:::::::::::::.:.::.:::.::::::::::::::..: ::: :::.::.:::: ::
NP_001 LAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLE
300 310 320 330 340 350
340 350 360 370 380 390
pF1KSD QLGYKA------STNLQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEA
::.:. . :... ::: .: .: : : :: .. .: . . : ..
NP_001 ILGFKVPQAQPTKPALKSE-EKTPIKKPGDGRKVTFFEPGSGDENGTSN-KEDEFRMPYL
360 370 380 390 400
400 410 420 430 440
pF1KSD SRHKVISGTTLGYLSPK-------DMNQPSSSFFSISPT---SNSSATIARELLMNGTSS
:.... .: . . :. .... ...: .:. .. .: ::::::..:::
NP_001 SHQQLPAG--ILPMVPEVAQAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSP
410 420 430 440 450 460
450 460 470
pF1KSD TAEAIGLKG--SSPTPPCSPV-QPSKQLEYLARIQGFQV
:::.: ::. :: : .:. .::.::.::.:.:::::
NP_001 TAETI-LKNNISSGHVPHGPLTRPSEQLDYLSRVQGFQVEYKDFPKNNKNEFVSLINCSS
470 480 490 500 510 520
NP_001 QPPLISHGIGKDVESCHDMAALNILKLLSELDQQSTEMPRTGNGPMSVCGRC
530 540 550 560 570
>>NP_001309859 (OMIM: 601716) double-stranded RNA-bindin (577 aa)
initn: 664 init1: 530 opt: 1203 Z-score: 1155.7 bits: 223.5 E(85289): 1.2e-57
Smith-Waterman score: 1349; 49.3% identity (72.9% similar) in 513 aa overlap (7-479:1-504)
10 20 30 40 50
pF1KSD MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKAL-----TESTLP-----KPVQKP
: .::... . . ::.: . .:.. .. : : :.:: .:.:.
NP_001 MSQVQVQVQNPSAALSGSQILNKNQSLLSQPLMSIPSTTSSLPSENAGRPIQNS
10 20 30 40 50
60 70 80 90 100
pF1KSD --PKSNVNNNPG---SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRG-MYNQ
:....... . :::::::::.: :: :. .:.:.:: . :::.:: :
NP_001 ALPSASITSTSAAAESITPTVELNALCMKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPP
60 70 80 90 100 110
110 120 130 140 150 160
pF1KSD RYH--CPVPKIFY-VQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGE
:: ::: ..: :.:.::...: :.:::::::.:.:: :::. :::::.::: ::.
NP_001 RYFYPFPVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLEVNGR
120 130 140 150 160 170
170 180 190 200 210 220
pF1KSD SGKDVDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGE
. .... :::::: :::::::::.::.::: .::::::::.:::.:::::: .:::
NP_001 ES----EEENLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGE
180 190 200 210 220 230
230 240 250 260 270
pF1KSD GNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVK--AGPEYGQGMNPISR
:.:::.::: :: .::.:::::::::.::. : .::. : ::: ..::::::.:::::
NP_001 GKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISR
240 250 260 270 280 290
280 290 300 310 320 330
pF1KSD LAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLL
:::::::::::::.:.::.:::.::::::::::::::..: ::: :::.::.:::: ::
NP_001 LAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLE
300 310 320 330 340 350
340 350 360 370 380 390
pF1KSD QLGYKA------STNLQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEA
::.:. . :... ::: .: .: : : :: .. .: . . : ..
NP_001 ILGFKVPQAQPTKPALKSE-EKTPIKKPGDGRKVTFFEPGSGDENGTSN-KEDEFRMPYL
360 370 380 390 400
400 410 420 430 440
pF1KSD SRHKVISGTTLGYLSPK-------DMNQPSSSFFSISPT---SNSSATIARELLMNGTSS
:.... .: . . :. .... ...: .:. .. .: ::::::..:::
NP_001 SHQQLPAG--ILPMVPEVAQAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSP
410 420 430 440 450 460
450 460 470
pF1KSD TAEAIGLKG--SSPTPPCSPV-QPSKQLEYLARIQGFQV
:::.: ::. :: : .:. .::.::.::.:.:::::
NP_001 TAETI-LKNNISSGHVPHGPLTRPSEQLDYLSRVQGFQVEYKDFPKNNKNEFVSLINCSS
470 480 490 500 510 520
NP_001 QPPLISHGIGKDVESCHDMAALNILKLLSELDQQSTEMPRTGNGPMSVCGRC
530 540 550 560 570
479 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:12:44 2016 done: Thu Nov 3 08:12:45 2016
Total Scan time: 10.710 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]