Result of FASTA (omim) for
pF1KSDB0035
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDB0035, 469 aa
1>>>pF1KSDB0035 469 - 469 aa - 469 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.7499+/-0.000396; mu= -16.4385+/- 0.025
mean_var=385.0934+/-77.032, 0's: 0 Z-trim(123.5): 4 B-trim: 0 in 0/58
Lambda= 0.065357
statistics sampled from 43439 (43443) to 43439 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.509), width: 16
Scan time: 12.190
The best scores are: opt bits E(85289)
XP_011536857 (OMIM: 616381) PREDICTED: zinc finger ( 608) 3170 312.7 1.8e-84
XP_016875095 (OMIM: 616381) PREDICTED: zinc finger ( 616) 3170 312.7 1.9e-84
NP_060082 (OMIM: 616381) zinc finger CCHC domain-c ( 707) 3170 312.7 2.1e-84
XP_006719554 (OMIM: 616381) PREDICTED: zinc finger ( 630) 3120 308.0 5e-83
>>XP_011536857 (OMIM: 616381) PREDICTED: zinc finger CCH (608 aa)
initn: 3170 init1: 3170 opt: 3170 Z-score: 1637.4 bits: 312.7 E(85289): 1.8e-84
Smith-Waterman score: 3170; 100.0% identity (100.0% similar) in 469 aa overlap (1-469:140-608)
10 20 30
pF1KSD MKDCPMPRNAARISEKRKEYMDACGEANNQ
::::::::::::::::::::::::::::::
XP_011 HIVSLEGQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDACGEANNQ
110 120 130 140 150 160
40 50 60 70 80 90
pF1KSD NFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAEL
170 180 190 200 210 220
100 110 120 130 140 150
pF1KSD ENSGLALYDGKDGTDGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENSGLALYDGKDGTDGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGSI
230 240 250 260 270 280
160 170 180 190 200 210
pF1KSD PMQACQQKDVFANYLTSNFQAPGVKSGNKRSSSHSSPGSPKKQKNESNSAGSPADMELDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMQACQQKDVFANYLTSNFQAPGVKSGNKRSSSHSSPGSPKKQKNESNSAGSPADMELDS
290 300 310 320 330 340
220 230 240 250 260 270
pF1KSD DMEVPHGSQSSESFQFQPPLPPDTPPLPRGTPPPVFTPPLPKGTPPLTPSDSPQTRTASG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DMEVPHGSQSSESFQFQPPLPPDTPPLPRGTPPPVFTPPLPKGTPPLTPSDSPQTRTASG
350 360 370 380 390 400
280 290 300 310 320 330
pF1KSD AVDEDALTLEELEEQQRRIWAALEQAESVNSDSDVPVDTPLTGNSVASSPCPNELDLPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVDEDALTLEELEEQQRRIWAALEQAESVNSDSDVPVDTPLTGNSVASSPCPNELDLPVP
410 420 430 440 450 460
340 350 360 370 380 390
pF1KSD EGKTSEKQTLDEPEVPEIFTKKSEAGHASSPDSEVTSLCQKEKAELAPVNTEGALLDNGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGKTSEKQTLDEPEVPEIFTKKSEAGHASSPDSEVTSLCQKEKAELAPVNTEGALLDNGS
470 480 490 500 510 520
400 410 420 430 440 450
pF1KSD VVPNCDISNGGSQKLFPADTSPSTATKIHSPIPDMSKFATGITPFEFENMAESTGMYLRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVPNCDISNGGSQKLFPADTSPSTATKIHSPIPDMSKFATGITPFEFENMAESTGMYLRI
530 540 550 560 570 580
460
pF1KSD RSLLKNSPRNQQKNKKASE
:::::::::::::::::::
XP_011 RSLLKNSPRNQQKNKKASE
590 600
>>XP_016875095 (OMIM: 616381) PREDICTED: zinc finger CCH (616 aa)
initn: 3170 init1: 3170 opt: 3170 Z-score: 1637.3 bits: 312.7 E(85289): 1.9e-84
Smith-Waterman score: 3170; 100.0% identity (100.0% similar) in 469 aa overlap (1-469:148-616)
10 20 30
pF1KSD MKDCPMPRNAARISEKRKEYMDACGEANNQ
::::::::::::::::::::::::::::::
XP_016 HIVSLEGQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDACGEANNQ
120 130 140 150 160 170
40 50 60 70 80 90
pF1KSD NFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAEL
180 190 200 210 220 230
100 110 120 130 140 150
pF1KSD ENSGLALYDGKDGTDGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENSGLALYDGKDGTDGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGSI
240 250 260 270 280 290
160 170 180 190 200 210
pF1KSD PMQACQQKDVFANYLTSNFQAPGVKSGNKRSSSHSSPGSPKKQKNESNSAGSPADMELDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMQACQQKDVFANYLTSNFQAPGVKSGNKRSSSHSSPGSPKKQKNESNSAGSPADMELDS
300 310 320 330 340 350
220 230 240 250 260 270
pF1KSD DMEVPHGSQSSESFQFQPPLPPDTPPLPRGTPPPVFTPPLPKGTPPLTPSDSPQTRTASG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DMEVPHGSQSSESFQFQPPLPPDTPPLPRGTPPPVFTPPLPKGTPPLTPSDSPQTRTASG
360 370 380 390 400 410
280 290 300 310 320 330
pF1KSD AVDEDALTLEELEEQQRRIWAALEQAESVNSDSDVPVDTPLTGNSVASSPCPNELDLPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVDEDALTLEELEEQQRRIWAALEQAESVNSDSDVPVDTPLTGNSVASSPCPNELDLPVP
420 430 440 450 460 470
340 350 360 370 380 390
pF1KSD EGKTSEKQTLDEPEVPEIFTKKSEAGHASSPDSEVTSLCQKEKAELAPVNTEGALLDNGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGKTSEKQTLDEPEVPEIFTKKSEAGHASSPDSEVTSLCQKEKAELAPVNTEGALLDNGS
480 490 500 510 520 530
400 410 420 430 440 450
pF1KSD VVPNCDISNGGSQKLFPADTSPSTATKIHSPIPDMSKFATGITPFEFENMAESTGMYLRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVPNCDISNGGSQKLFPADTSPSTATKIHSPIPDMSKFATGITPFEFENMAESTGMYLRI
540 550 560 570 580 590
460
pF1KSD RSLLKNSPRNQQKNKKASE
:::::::::::::::::::
XP_016 RSLLKNSPRNQQKNKKASE
600 610
>>NP_060082 (OMIM: 616381) zinc finger CCHC domain-conta (707 aa)
initn: 3170 init1: 3170 opt: 3170 Z-score: 1636.4 bits: 312.7 E(85289): 2.1e-84
Smith-Waterman score: 3170; 100.0% identity (100.0% similar) in 469 aa overlap (1-469:239-707)
10 20 30
pF1KSD MKDCPMPRNAARISEKRKEYMDACGEANNQ
::::::::::::::::::::::::::::::
NP_060 HIVSLEGQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDACGEANNQ
210 220 230 240 250 260
40 50 60 70 80 90
pF1KSD NFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAEL
270 280 290 300 310 320
100 110 120 130 140 150
pF1KSD ENSGLALYDGKDGTDGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ENSGLALYDGKDGTDGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGSI
330 340 350 360 370 380
160 170 180 190 200 210
pF1KSD PMQACQQKDVFANYLTSNFQAPGVKSGNKRSSSHSSPGSPKKQKNESNSAGSPADMELDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PMQACQQKDVFANYLTSNFQAPGVKSGNKRSSSHSSPGSPKKQKNESNSAGSPADMELDS
390 400 410 420 430 440
220 230 240 250 260 270
pF1KSD DMEVPHGSQSSESFQFQPPLPPDTPPLPRGTPPPVFTPPLPKGTPPLTPSDSPQTRTASG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DMEVPHGSQSSESFQFQPPLPPDTPPLPRGTPPPVFTPPLPKGTPPLTPSDSPQTRTASG
450 460 470 480 490 500
280 290 300 310 320 330
pF1KSD AVDEDALTLEELEEQQRRIWAALEQAESVNSDSDVPVDTPLTGNSVASSPCPNELDLPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 AVDEDALTLEELEEQQRRIWAALEQAESVNSDSDVPVDTPLTGNSVASSPCPNELDLPVP
510 520 530 540 550 560
340 350 360 370 380 390
pF1KSD EGKTSEKQTLDEPEVPEIFTKKSEAGHASSPDSEVTSLCQKEKAELAPVNTEGALLDNGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EGKTSEKQTLDEPEVPEIFTKKSEAGHASSPDSEVTSLCQKEKAELAPVNTEGALLDNGS
570 580 590 600 610 620
400 410 420 430 440 450
pF1KSD VVPNCDISNGGSQKLFPADTSPSTATKIHSPIPDMSKFATGITPFEFENMAESTGMYLRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VVPNCDISNGGSQKLFPADTSPSTATKIHSPIPDMSKFATGITPFEFENMAESTGMYLRI
630 640 650 660 670 680
460
pF1KSD RSLLKNSPRNQQKNKKASE
:::::::::::::::::::
NP_060 RSLLKNSPRNQQKNKKASE
690 700
>>XP_006719554 (OMIM: 616381) PREDICTED: zinc finger CCH (630 aa)
initn: 3119 init1: 3119 opt: 3120 Z-score: 1611.7 bits: 308.0 E(85289): 5e-83
Smith-Waterman score: 3120; 99.1% identity (99.4% similar) in 468 aa overlap (2-469:163-630)
10 20 30
pF1KSD MKDCPMPRNAARISEKRKEYMDACGEANNQN
:. :::::::::::::::::::::::::
XP_006 KTSFNLLPQPSSIVLEEDHKVEESCAIKNNKEAFSPRNAARISEKRKEYMDACGEANNQN
140 150 160 170 180 190
40 50 60 70 80 90
pF1KSD FQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELE
200 210 220 230 240 250
100 110 120 130 140 150
pF1KSD NSGLALYDGKDGTDGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGSIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NSGLALYDGKDGTDGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGSIP
260 270 280 290 300 310
160 170 180 190 200 210
pF1KSD MQACQQKDVFANYLTSNFQAPGVKSGNKRSSSHSSPGSPKKQKNESNSAGSPADMELDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MQACQQKDVFANYLTSNFQAPGVKSGNKRSSSHSSPGSPKKQKNESNSAGSPADMELDSD
320 330 340 350 360 370
220 230 240 250 260 270
pF1KSD MEVPHGSQSSESFQFQPPLPPDTPPLPRGTPPPVFTPPLPKGTPPLTPSDSPQTRTASGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEVPHGSQSSESFQFQPPLPPDTPPLPRGTPPPVFTPPLPKGTPPLTPSDSPQTRTASGA
380 390 400 410 420 430
280 290 300 310 320 330
pF1KSD VDEDALTLEELEEQQRRIWAALEQAESVNSDSDVPVDTPLTGNSVASSPCPNELDLPVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VDEDALTLEELEEQQRRIWAALEQAESVNSDSDVPVDTPLTGNSVASSPCPNELDLPVPE
440 450 460 470 480 490
340 350 360 370 380 390
pF1KSD GKTSEKQTLDEPEVPEIFTKKSEAGHASSPDSEVTSLCQKEKAELAPVNTEGALLDNGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GKTSEKQTLDEPEVPEIFTKKSEAGHASSPDSEVTSLCQKEKAELAPVNTEGALLDNGSV
500 510 520 530 540 550
400 410 420 430 440 450
pF1KSD VPNCDISNGGSQKLFPADTSPSTATKIHSPIPDMSKFATGITPFEFENMAESTGMYLRIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VPNCDISNGGSQKLFPADTSPSTATKIHSPIPDMSKFATGITPFEFENMAESTGMYLRIR
560 570 580 590 600 610
460
pF1KSD SLLKNSPRNQQKNKKASE
::::::::::::::::::
XP_006 SLLKNSPRNQQKNKKASE
620 630
469 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:14:50 2016 done: Thu Nov 3 08:14:52 2016
Total Scan time: 12.190 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]