Result of FASTA (ccds) for
pF1KSDB0055
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDB0055, 1332 aa
1>>>pF1KSDB0055 1332 - 1332 aa - 1332 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3366+/-0.00111; mu= 16.7598+/- 0.067
mean_var=71.5987+/-14.239, 0's: 0 Z-trim(102.3): 38 B-trim: 0 in 0/50
Lambda= 0.151573
statistics sampled from 6869 (6887) to 6869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.572), E-opt: 0.2 (0.212), width: 16
Scan time: 5.180
The best scores are: opt bits E(32554)
CCDS6773.1 IKBKAP gene_id:8518|Hs108|chr9 (1332) 8889 1954.0 0
CCDS83394.1 IKBKAP gene_id:8518|Hs108|chr9 ( 983) 6525 1437.0 0
>>CCDS6773.1 IKBKAP gene_id:8518|Hs108|chr9 (1332 aa)
initn: 8889 init1: 8889 opt: 8889 Z-score: 10493.5 bits: 1954.0 E(32554): 0
Smith-Waterman score: 8889; 100.0% identity (100.0% similar) in 1332 aa overlap (1-1332:1-1332)
10 20 30 40 50 60
pF1KSD MRNLKLFRTLEFRDIQGPGNPQCFSLRTEQGTVLIGSEHGLIEVDPVSREVKNEVSLVAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MRNLKLFRTLEFRDIQGPGNPQCFSLRTEQGTVLIGSEHGLIEVDPVSREVKNEVSLVAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GFLPEDGSGRIVGVQDLLDQESVCVATASGDVILCSLSTQQLECVGSVASGISVMSWSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GFLPEDGSGRIVGVQDLLDQESVCVATASGDVILCSLSTQQLECVGSVASGISVMSWSPD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD QELVLLATGQQTLIMMTKDFEPILEQQIHQDDFGESKFITVGWGRKETQFHGSEGRQAAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 QELVLLATGQQTLIMMTKDFEPILEQQIHQDDFGESKFITVGWGRKETQFHGSEGRQAAF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QMQMHESALPWDDHRPQVTWRGDGQFFAVSVVCPETGARKVRVWNREFALQSTSEPVAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 QMQMHESALPWDDHRPQVTWRGDGQFFAVSVVCPETGARKVRVWNREFALQSTSEPVAGL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GPALAWKPSGSLIASTQDKPNQQDIVFFEKNGLLHGHFTLPFLKDEVKVNDLLWNADSSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GPALAWKPSGSLIASTQDKPNQQDIVFFEKNGLLHGHFTLPFLKDEVKVNDLLWNADSSV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LAVWLEDLQREESSIPKTCVQLWTVGNYHWYLKQSLSFSTCGKSKIVSLMWDPVTPYRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LAVWLEDLQREESSIPKTCVQLWTVGNYHWYLKQSLSFSTCGKSKIVSLMWDPVTPYRLH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD VLCQGWHYLAYDWHWTTDRSVGDNSSDLSNVAVIDGNRVLVTVFRQTVVPPPMCTYQLLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 VLCQGWHYLAYDWHWTTDRSVGDNSSDLSNVAVIDGNRVLVTVFRQTVVPPPMCTYQLLF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PHPVNQVTFLAHPQKSNDLAVLDASNQISVYKCGDCPSADPTVKLGAVGGSGFKVCLRTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PHPVNQVTFLAHPQKSNDLAVLDASNQISVYKCGDCPSADPTVKLGAVGGSGFKVCLRTP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD HLEKRYKIQFENNEDQDVNPLKLGLLTWIEEDVFLAVSHSEFSPRSVIHHLTAASSEMDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 HLEKRYKIQFENNEDQDVNPLKLGLLTWIEEDVFLAVSHSEFSPRSVIHHLTAASSEMDE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD EHGQLNVSSSAAVDGVIISLCCNSKTKSVVLQLADGQIFKYLWESPSLAIKPWKNSGGFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 EHGQLNVSSSAAVDGVIISLCCNSKTKSVVLQLADGQIFKYLWESPSLAIKPWKNSGGFP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD VRFPYPCTQTELAMIGEEECVLGLTDRCRFFINDIEVASNITSFAVYDEFLLLTTHSHTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 VRFPYPCTQTELAMIGEEECVLGLTDRCRFFINDIEVASNITSFAVYDEFLLLTTHSHTC
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD QCFCLRDASFKTLQAGLSSNHVSHGEVLRKVERGSRIVTVVPQDTKLVLQMPRGNLEVVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 QCFCLRDASFKTLQAGLSSNHVSHGEVLRKVERGSRIVTVVPQDTKLVLQMPRGNLEVVH
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD HRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIYDHNPKVFLGNVETFIKQIDSVNHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 HRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIYDHNPKVFLGNVETFIKQIDSVNHI
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD NLFFTELKEEDVTKTMYPAPVTSSVYLSRDPDGNKIDLVCDAMRAVMESINPHKYCLSIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 NLFFTELKEEDVTKTMYPAPVTSSVYLSRDPDGNKIDLVCDAMRAVMESINPHKYCLSIL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD TSHVKKTTPELEIVLQKVHELQGNAPSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 TSHVKKTTPELEIVLQKVHELQGNAPSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDF
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD DLVLMVAEKSQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 DLVLMVAEKSQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPE
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD CLNLIKDKNLYNEALKLYSPSSQQYQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 CLNLIKDKNLYNEALKLYSPSSQQYQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALS
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD AFLTCGNWKQALCVAAQLNFTKDQLVGLGRTLAGKLVEQRKHIDAAMVLEECAQDYEEAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 AFLTCGNWKQALCVAAQLNFTKDQLVGLGRTLAGKLVEQRKHIDAAMVLEECAQDYEEAV
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD LLLLEGAAWEEALRLVYKYNRLDIIETNVKPSILEAQKNYMAFLDSQTATFSRHKKRLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LLLLEGAAWEEALRLVYKYNRLDIIETNVKPSILEAQKNYMAFLDSQTATFSRHKKRLLV
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD VRELKEQAQQAGLDDEVPHGQESDLFSETSSVVSGSEMSGKYSHSNSRISARSSKNRRKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 VRELKEQAQQAGLDDEVPHGQESDLFSETSSVVSGSEMSGKYSHSNSRISARSSKNRRKA
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD ERKKHSLKEGSPLEDLALLEALSEVVQNTENLKDEVYHILKVLFLFEFDEQGRELQKAFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 ERKKHSLKEGSPLEDLALLEALSEVVQNTENLKDEVYHILKVLFLFEFDEQGRELQKAFE
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KSD DTLQLMERSLPEIWTLTYQQNSATPVLGPNSTANSIMASYQQQKTSVPVLDAELFIPPKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 DTLQLMERSLPEIWTLTYQQNSATPVLGPNSTANSIMASYQQQKTSVPVLDAELFIPPKI
1270 1280 1290 1300 1310 1320
1330
pF1KSD NRRTQWKLSLLD
::::::::::::
CCDS67 NRRTQWKLSLLD
1330
>>CCDS83394.1 IKBKAP gene_id:8518|Hs108|chr9 (983 aa)
initn: 6525 init1: 6525 opt: 6525 Z-score: 7702.0 bits: 1437.0 E(32554): 0
Smith-Waterman score: 6525; 100.0% identity (100.0% similar) in 983 aa overlap (350-1332:1-983)
320 330 340 350 360 370
pF1KSD VQLWTVGNYHWYLKQSLSFSTCGKSKIVSLMWDPVTPYRLHVLCQGWHYLAYDWHWTTDR
::::::::::::::::::::::::::::::
CCDS83 MWDPVTPYRLHVLCQGWHYLAYDWHWTTDR
10 20 30
380 390 400 410 420 430
pF1KSD SVGDNSSDLSNVAVIDGNRVLVTVFRQTVVPPPMCTYQLLFPHPVNQVTFLAHPQKSNDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SVGDNSSDLSNVAVIDGNRVLVTVFRQTVVPPPMCTYQLLFPHPVNQVTFLAHPQKSNDL
40 50 60 70 80 90
440 450 460 470 480 490
pF1KSD AVLDASNQISVYKCGDCPSADPTVKLGAVGGSGFKVCLRTPHLEKRYKIQFENNEDQDVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AVLDASNQISVYKCGDCPSADPTVKLGAVGGSGFKVCLRTPHLEKRYKIQFENNEDQDVN
100 110 120 130 140 150
500 510 520 530 540 550
pF1KSD PLKLGLLTWIEEDVFLAVSHSEFSPRSVIHHLTAASSEMDEEHGQLNVSSSAAVDGVIIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 PLKLGLLTWIEEDVFLAVSHSEFSPRSVIHHLTAASSEMDEEHGQLNVSSSAAVDGVIIS
160 170 180 190 200 210
560 570 580 590 600 610
pF1KSD LCCNSKTKSVVLQLADGQIFKYLWESPSLAIKPWKNSGGFPVRFPYPCTQTELAMIGEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LCCNSKTKSVVLQLADGQIFKYLWESPSLAIKPWKNSGGFPVRFPYPCTQTELAMIGEEE
220 230 240 250 260 270
620 630 640 650 660 670
pF1KSD CVLGLTDRCRFFINDIEVASNITSFAVYDEFLLLTTHSHTCQCFCLRDASFKTLQAGLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 CVLGLTDRCRFFINDIEVASNITSFAVYDEFLLLTTHSHTCQCFCLRDASFKTLQAGLSS
280 290 300 310 320 330
680 690 700 710 720 730
pF1KSD NHVSHGEVLRKVERGSRIVTVVPQDTKLVLQMPRGNLEVVHHRALVLAQIRKWLDKLMFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NHVSHGEVLRKVERGSRIVTVVPQDTKLVLQMPRGNLEVVHHRALVLAQIRKWLDKLMFK
340 350 360 370 380 390
740 750 760 770 780 790
pF1KSD EAFECMRKLRINLNLIYDHNPKVFLGNVETFIKQIDSVNHINLFFTELKEEDVTKTMYPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EAFECMRKLRINLNLIYDHNPKVFLGNVETFIKQIDSVNHINLFFTELKEEDVTKTMYPA
400 410 420 430 440 450
800 810 820 830 840 850
pF1KSD PVTSSVYLSRDPDGNKIDLVCDAMRAVMESINPHKYCLSILTSHVKKTTPELEIVLQKVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 PVTSSVYLSRDPDGNKIDLVCDAMRAVMESINPHKYCLSILTSHVKKTTPELEIVLQKVH
460 470 480 490 500 510
860 870 880 890 900 910
pF1KSD ELQGNAPSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ELQGNAPSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLP
520 530 540 550 560 570
920 930 940 950 960 970
pF1KSD FLNTLKKMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKDKNLYNEALKLYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 FLNTLKKMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKDKNLYNEALKLYS
580 590 600 610 620 630
980 990 1000 1010 1020 1030
pF1KSD PSSQQYQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 PSSQQYQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLN
640 650 660 670 680 690
1040 1050 1060 1070 1080 1090
pF1KSD FTKDQLVGLGRTLAGKLVEQRKHIDAAMVLEECAQDYEEAVLLLLEGAAWEEALRLVYKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 FTKDQLVGLGRTLAGKLVEQRKHIDAAMVLEECAQDYEEAVLLLLEGAAWEEALRLVYKY
700 710 720 730 740 750
1100 1110 1120 1130 1140 1150
pF1KSD NRLDIIETNVKPSILEAQKNYMAFLDSQTATFSRHKKRLLVVRELKEQAQQAGLDDEVPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NRLDIIETNVKPSILEAQKNYMAFLDSQTATFSRHKKRLLVVRELKEQAQQAGLDDEVPH
760 770 780 790 800 810
1160 1170 1180 1190 1200 1210
pF1KSD GQESDLFSETSSVVSGSEMSGKYSHSNSRISARSSKNRRKAERKKHSLKEGSPLEDLALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GQESDLFSETSSVVSGSEMSGKYSHSNSRISARSSKNRRKAERKKHSLKEGSPLEDLALL
820 830 840 850 860 870
1220 1230 1240 1250 1260 1270
pF1KSD EALSEVVQNTENLKDEVYHILKVLFLFEFDEQGRELQKAFEDTLQLMERSLPEIWTLTYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EALSEVVQNTENLKDEVYHILKVLFLFEFDEQGRELQKAFEDTLQLMERSLPEIWTLTYQ
880 890 900 910 920 930
1280 1290 1300 1310 1320 1330
pF1KSD QNSATPVLGPNSTANSIMASYQQQKTSVPVLDAELFIPPKINRRTQWKLSLLD
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 QNSATPVLGPNSTANSIMASYQQQKTSVPVLDAELFIPPKINRRTQWKLSLLD
940 950 960 970 980
1332 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:22:36 2016 done: Thu Nov 3 08:22:37 2016
Total Scan time: 5.180 Total Display time: 0.140
Function used was FASTA [36.3.4 Apr, 2011]