Result of FASTA (ccds) for
pF1KSDB0058
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDB0058, 1101 aa
1>>>pF1KSDB0058 1101 - 1101 aa - 1101 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3745+/-0.00111; mu= 16.4280+/- 0.066
mean_var=82.1846+/-16.374, 0's: 0 Z-trim(103.6): 25 B-trim: 3 in 1/49
Lambda= 0.141475
statistics sampled from 7464 (7467) to 7464 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.229), width: 16
Scan time: 4.690
The best scores are: opt bits E(32554)
CCDS11412.1 ACLY gene_id:47|Hs108|chr17 (1101) 7328 1506.4 0
CCDS11413.1 ACLY gene_id:47|Hs108|chr17 (1091) 4132 854.1 0
CCDS1967.2 SUCLG1 gene_id:8802|Hs108|chr2 ( 346) 302 72.2 2.3e-12
>>CCDS11412.1 ACLY gene_id:47|Hs108|chr17 (1101 aa)
initn: 7328 init1: 7328 opt: 7328 Z-score: 8077.4 bits: 1506.4 E(32554): 0
Smith-Waterman score: 7328; 100.0% identity (100.0% similar) in 1101 aa overlap (1-1101:1-1101)
10 20 30 40 50 60
pF1KSD MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD SPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK
1030 1040 1050 1060 1070 1080
1090 1100
pF1KSD QGLYRHPWDDISYVLPEHMSM
:::::::::::::::::::::
CCDS11 QGLYRHPWDDISYVLPEHMSM
1090 1100
>>CCDS11413.1 ACLY gene_id:47|Hs108|chr17 (1091 aa)
initn: 4118 init1: 4118 opt: 4132 Z-score: 4552.1 bits: 854.1 E(32554): 0
Smith-Waterman score: 7231; 99.1% identity (99.1% similar) in 1101 aa overlap (1-1101:1-1091)
10 20 30 40 50 60
pF1KSD MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQ----
430 440 450 460 470
490 500 510 520 530 540
pF1KSD SPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ------GKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK
480 490 500 510 520 530
550 560 570 580 590 600
pF1KSD FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG
540 550 560 570 580 590
610 620 630 640 650 660
pF1KSD IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV
600 610 620 630 640 650
670 680 690 700 710 720
pF1KSD SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG
660 670 680 690 700 710
730 740 750 760 770 780
pF1KSD GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK
720 730 740 750 760 770
790 800 810 820 830 840
pF1KSD EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF
780 790 800 810 820 830
850 860 870 880 890 900
pF1KSD MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH
840 850 860 870 880 890
910 920 930 940 950 960
pF1KSD GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV
900 910 920 930 940 950
970 980 990 1000 1010 1020
pF1KSD NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN
960 970 980 990 1000 1010
1030 1040 1050 1060 1070 1080
pF1KSD LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK
1020 1030 1040 1050 1060 1070
1090 1100
pF1KSD QGLYRHPWDDISYVLPEHMSM
:::::::::::::::::::::
CCDS11 QGLYRHPWDDISYVLPEHMSM
1080 1090
>>CCDS1967.2 SUCLG1 gene_id:8802|Hs108|chr2 (346 aa)
initn: 245 init1: 164 opt: 302 Z-score: 335.4 bits: 72.2 E(32554): 2.3e-12
Smith-Waterman score: 315; 26.1% identity (54.1% similar) in 333 aa overlap (474-802:33-341)
450 460 470 480 490 500
pF1KSD STSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVPSPRSLQGKSTTLFSRHTKAIVWG
.::... ... ...:: : :
CCDS19 ATLAAAADIATMVSGSSGLAAARLLSRSFLLPQNGIRHCSYTASRQHLYVDKNTKIICQG
10 20 30 40 50 60
510 520 530 540 550 560
pF1KSD MQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKH
. . :: . . . :.. . : : :. .. .:::... .: ...
CCDS19 FTGK--QGTFHSQQALEYGTKLVGGTT-PGKG--------GQTHLGLPVFNTVKEA-KEQ
70 80 90 100 110
570 580 590 600 610 620
pF1KSD PEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEA-LTRKLIKKADQKGVTIIG
. . . .. : . :... :.: .. :.::::. ..: : :. . .::
CCDS19 TGATASVIYVPPPFAAAAINEAIE-AEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIG
120 130 140 150 160
630 640 650 660 670 680
pF1KSD PATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVY
: : :.:: ::: :. ..... : .. ::::: .. : . ... :
CCDS19 PNCPGVINPGECKIG--------IMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQS
170 180 190 200 210 220
690 700 710 720 730
pF1KSD EGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKE---GRLTKP
:.:::: . :. :.: . . . ... :...:::::. : . . .:. : .::
CCDS19 LCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGPNSKP
230 240 250 260 270 280
740 750 760 770 780 790
pF1KSD IVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQS
.: . : : ..::::: .. : : .::. ::: : : .:: : .
CCDS19 VVSFIAGLTAP---PGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYK
290 300 310 320 330
800 810 820 830 840 850
pF1KSD VYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASFMTSICDERGQELIYAGMPI
.:
CCDS19 EFEKRKML
340
1101 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:24:00 2016 done: Thu Nov 3 08:24:01 2016
Total Scan time: 4.690 Total Display time: 0.130
Function used was FASTA [36.3.4 Apr, 2011]