Result of FASTA (ccds) for
pF1KSDB0062
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDB0062, 670 aa
1>>>pF1KSDB0062 670 - 670 aa - 670 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5716+/-0.000915; mu= 13.1665+/- 0.055
mean_var=82.9029+/-16.467, 0's: 0 Z-trim(106.7): 22 B-trim: 0 in 0/52
Lambda= 0.140861
statistics sampled from 9121 (9135) to 9121 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.281), width: 16
Scan time: 3.850
The best scores are: opt bits E(32554)
CCDS4004.1 RAD17 gene_id:5884|Hs108|chr5 ( 670) 4471 918.7 0
CCDS4003.1 RAD17 gene_id:5884|Hs108|chr5 ( 681) 4452 914.8 0
CCDS4005.1 RAD17 gene_id:5884|Hs108|chr5 ( 584) 3882 799.0 0
CCDS47226.1 RAD17 gene_id:5884|Hs108|chr5 ( 505) 3358 692.5 3.9e-199
>>CCDS4004.1 RAD17 gene_id:5884|Hs108|chr5 (670 aa)
initn: 4471 init1: 4471 opt: 4471 Z-score: 4908.9 bits: 918.7 E(32554): 0
Smith-Waterman score: 4471; 100.0% identity (100.0% similar) in 670 aa overlap (1-670:1-670)
10 20 30 40 50 60
pF1KSD MNQVTDWVDPSFDDFLECSGVSTITATSLGVNNSSHRRKNGPSTLESSRFPARKRGNLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MNQVTDWVDPSFDDFLECSGVSTITATSLGVNNSSHRRKNGPSTLESSRFPARKRGNLSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LEQIYGLENSKEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LEQIYGLENSKEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 QIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD CPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 CPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 GKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKSKR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RKKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERDTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 RKKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERDTL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSLLR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD EYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPDFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPDFC
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD LPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMIDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMIDP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD DSGDEAQLNGGHSAEESLGEPTQATVPETWSLPLSQNSASELPASQPQPFSAQGDMEENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DSGDEAQLNGGHSAEESLGEPTQATVPETWSLPLSQNSASELPASQPQPFSAQGDMEENI
610 620 630 640 650 660
670
pF1KSD IIEDYESDGT
::::::::::
CCDS40 IIEDYESDGT
670
>>CCDS4003.1 RAD17 gene_id:5884|Hs108|chr5 (681 aa)
initn: 4452 init1: 4452 opt: 4452 Z-score: 4887.9 bits: 914.8 E(32554): 0
Smith-Waterman score: 4452; 99.9% identity (100.0% similar) in 668 aa overlap (3-670:14-681)
10 20 30 40
pF1KSD MNQVTDWVDPSFDDFLECSGVSTITATSLGVNNSSHRRKNGPSTLESSR
.::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MSKTFLRPKVSSTKVTDWVDPSFDDFLECSGVSTITATSLGVNNSSHRRKNGPSTLESSR
10 20 30 40 50 60
50 60 70 80 90 100
pF1KSD FPARKRGNLSSLEQIYGLENSKEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 FPARKRGNLSSLEQIYGLENSKEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD VLERQPKQGGSILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VLERQPKQGGSILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNT
130 140 150 160 170 180
170 180 190 200 210 220
pF1KSD ESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLH
190 200 210 220 230 240
230 240 250 260 270 280
pF1KSD EVLRKYVRIGRCPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EVLRKYVRIGRCPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLN
250 260 270 280 290 300
290 300 310 320 330 340
pF1KSD RIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 RIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSL
310 320 330 340 350 360
350 360 370 380 390 400
pF1KSD KSDAVLSKSKRRKKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASLTELDSPRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KSDAVLSKSKRRKKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASLTELDSPRLP
370 380 390 400 410 420
410 420 430 440 450 460
pF1KSD SHLSEYERDTLLVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SHLSEYERDTLLVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADIL
430 440 450 460 470 480
470 480 490 500 510 520
pF1KSD SGDWNTRSLLREYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SGDWNTRSLLREYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENC
490 500 510 520 530 540
530 540 550 560 570 580
pF1KSD LAAKALFPDFCLPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LAAKALFPDFCLPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEA
550 560 570 580 590 600
590 600 610 620 630 640
pF1KSD LTDREHGMIDPDSGDEAQLNGGHSAEESLGEPTQATVPETWSLPLSQNSASELPASQPQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LTDREHGMIDPDSGDEAQLNGGHSAEESLGEPTQATVPETWSLPLSQNSASELPASQPQP
610 620 630 640 650 660
650 660 670
pF1KSD FSAQGDMEENIIIEDYESDGT
:::::::::::::::::::::
CCDS40 FSAQGDMEENIIIEDYESDGT
670 680
>>CCDS4005.1 RAD17 gene_id:5884|Hs108|chr5 (584 aa)
initn: 3882 init1: 3882 opt: 3882 Z-score: 4263.0 bits: 799.0 E(32554): 0
Smith-Waterman score: 3882; 100.0% identity (100.0% similar) in 582 aa overlap (89-670:3-584)
60 70 80 90 100 110
pF1KSD SSLEQIYGLENSKEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQG
::::::::::::::::::::::::::::::
CCDS40 MNQHELAVHKKKIEEVETWLKAQVLERQPKQG
10 20 30
120 130 140 150 160 170
pF1KSD GSILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 GSILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPY
40 50 60 70 80 90
180 190 200 210 220 230
pF1KSD QSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 QSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRI
100 110 120 130 140 150
240 250 260 270 280 290
pF1KSD GRCPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 GRCPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANK
160 170 180 190 200 210
300 310 320 330 340 350
pF1KSD NGGKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 NGGKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKS
220 230 240 250 260 270
360 370 380 390 400 410
pF1KSD KRRKKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KRRKKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERD
280 290 300 310 320 330
420 430 440 450 460 470
pF1KSD TLLVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 TLLVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSL
340 350 360 370 380 390
480 490 500 510 520 530
pF1KSD LREYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LREYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPD
400 410 420 430 440 450
540 550 560 570 580 590
pF1KSD FCLPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 FCLPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMI
460 470 480 490 500 510
600 610 620 630 640 650
pF1KSD DPDSGDEAQLNGGHSAEESLGEPTQATVPETWSLPLSQNSASELPASQPQPFSAQGDMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DPDSGDEAQLNGGHSAEESLGEPTQATVPETWSLPLSQNSASELPASQPQPFSAQGDMEE
520 530 540 550 560 570
660 670
pF1KSD NIIIEDYESDGT
::::::::::::
CCDS40 NIIIEDYESDGT
580
>>CCDS47226.1 RAD17 gene_id:5884|Hs108|chr5 (505 aa)
initn: 3358 init1: 3358 opt: 3358 Z-score: 3688.6 bits: 692.5 E(32554): 3.9e-199
Smith-Waterman score: 3358; 100.0% identity (100.0% similar) in 505 aa overlap (166-670:1-505)
140 150 160 170 180 190
pF1KSD LKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKY
::::::::::::::::::::::::::::::
CCDS47 MFNTESSFHMFPYQSQIAVFKEFLLRATKY
10 20 30
200 210 220 230 240 250
pF1KSD NKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDN
40 50 60 70 80 90
260 270 280 290 300 310
pF1KSD NQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLC
100 110 120 130 140 150
320 330 340 350 360 370
pF1KSD QGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKSKRRKKPDRVFENQEVQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKSKRRKKPDRVFENQEVQA
160 170 180 190 200 210
380 390 400 410 420 430
pF1KSD IGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERDTLLVEPEEVVEMSHMPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERDTLLVEPEEVVEMSHMPG
220 230 240 250 260 270
440 450 460 470 480 490
pF1KSD DLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSLLREYSTSIATRGVMHSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSLLREYSTSIATRGVMHSN
280 290 300 310 320 330
500 510 520 530 540 550
pF1KSD KARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPDFCLPALCLQTQLLPYLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPDFCLPALCLQTQLLPYLA
340 350 360 370 380 390
560 570 580 590 600 610
pF1KSD LLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMIDPDSGDEAQLNGGHSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMIDPDSGDEAQLNGGHSAE
400 410 420 430 440 450
620 630 640 650 660 670
pF1KSD ESLGEPTQATVPETWSLPLSQNSASELPASQPQPFSAQGDMEENIIIEDYESDGT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ESLGEPTQATVPETWSLPLSQNSASELPASQPQPFSAQGDMEENIIIEDYESDGT
460 470 480 490 500
670 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:27:40 2016 done: Thu Nov 3 08:27:41 2016
Total Scan time: 3.850 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]