FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDB1510, 581 aa
  1>>>pF1KSDB1510 581 - 581 aa - 581 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6125+/-0.000956; mu= 3.6930+/- 0.056
 mean_var=215.2759+/-48.135, 0's: 0 Z-trim(111.9): 59  B-trim: 803 in 1/50
 Lambda= 0.087413
 statistics sampled from 12741 (12788) to 12741 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.393), width:  16
 Scan time:  3.350

The best scores are:                                      opt bits E(32554)
CCDS211.1 PINK1 gene_id:65018|Hs108|chr1           ( 581) 3933 509.2 5.9e-144


>>CCDS211.1 PINK1 gene_id:65018|Hs108|chr1                (581 aa)
 initn: 3933 init1: 3933 opt: 3933  Z-score: 2698.0  bits: 509.2 E(32554): 5.9e-144
Smith-Waterman score: 3933; 100.0% identity (100.0% similar) in 581 aa overlap (1-581:1-581)

               10        20        30        40        50        60
pF1KSD MAVRQALGRGLQLGRALLLRFTGKPGRAYGLGRPGPAAGCVRGERPGWAAGPGAEPRRVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MAVRQALGRGLQLGRALLLRFTGKPGRAYGLGRPGPAAGCVRGERPGWAAGPGAEPRRVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LGLPNRLRFFRQSVAGLAARLQRQFVVRAWGCAGPCGRAVFLAFGLGLGLIEEKQAESRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 LGLPNRLRFFRQSVAGLAARLQRQFVVRAWGCAGPCGRAVFLAFGLGLGLIEEKQAESRR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD AVSACQEIQAIFTQKSKPGPDPLDTRRLQGFRLEEYLIGQSIGKGCSAAVYEATMPTLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 AVSACQEIQAIFTQKSKPGPDPLDTRRLQGFRLEEYLIGQSIGKGCSAAVYEATMPTLPQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NLEVTKSTGLLPGRGPGTSAPGEGQERAPGAPAFPLAIKMMWNISAGSSSEAILNTMSQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 NLEVTKSTGLLPGRGPGTSAPGEGQERAPGAPAFPLAIKMMWNISAGSSSEAILNTMSQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LVPASRVALAGEYGAVTYRKSKRGPKQLAPHPNIIRVLRAFTSSVPLLPGALVDYPDVLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 LVPASRVALAGEYGAVTYRKSKRGPKQLAPHPNIIRVLRAFTSSVPLLPGALVDYPDVLP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SRLHPEGLGHGRTLFLVMKNYPCTLRQYLCVNTPSPRLAAMMLLQLLEGVDHLVQQGIAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 SRLHPEGLGHGRTLFLVMKNYPCTLRQYLCVNTPSPRLAAMMLLQLLEGVDHLVQQGIAH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RDLKSDNILVELDPDGCPWLVIADFGCCLADESIGLQLPFSSWYVDRGGNGCLMAPEVST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 RDLKSDNILVELDPDGCPWLVIADFGCCLADESIGLQLPFSSWYVDRGGNGCLMAPEVST
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD ARPGPRAVIDYSKADAWAVGAIAYEIFGLVNPFYGQGKAHLESRSYQEAQLPALPESVPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 ARPGPRAVIDYSKADAWAVGAIAYEIFGLVNPFYGQGKAHLESRSYQEAQLPALPESVPP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD DVRQLVRALLQREASKRPSARVAANVLHLSLWGEHILALKNLKLDKMVGWLLQQSAATLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 DVRQLVRALLQREASKRPSARVAANVLHLSLWGEHILALKNLKLDKMVGWLLQQSAATLL
              490       500       510       520       530       540

              550       560       570       580 
pF1KSD ANRLTEKCCVETKMKMLFLANLECETLCQAALLLCSWRAAL
       :::::::::::::::::::::::::::::::::::::::::
CCDS21 ANRLTEKCCVETKMKMLFLANLECETLCQAALLLCSWRAAL
              550       560       570       580 




581 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:41:54 2016 done: Thu Nov  3 08:41:55 2016
 Total Scan time:  3.350 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]