Result of FASTA (omim) for
pF1KSDB2506
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDB2506, 403 aa
1>>>pF1KSDB2506 403 - 403 aa - 403 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4763+/-0.000418; mu= 16.4649+/- 0.026
mean_var=80.4193+/-16.332, 0's: 0 Z-trim(112.5): 89 B-trim: 931 in 1/51
Lambda= 0.143019
statistics sampled from 21370 (21459) to 21370 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.252), width: 16
Scan time: 8.610
The best scores are: opt bits E(85289)
XP_006721114 (OMIM: 605948) PREDICTED: G-protein c ( 403) 2696 566.2 4.9e-161
NP_057319 (OMIM: 605948) G-protein coupled recepto ( 403) 2696 566.2 4.9e-161
XP_006721115 (OMIM: 605948) PREDICTED: G-protein c ( 403) 2696 566.2 4.9e-161
NP_001291700 (OMIM: 605948) G-protein coupled rece ( 534) 2696 566.3 6.1e-161
XP_016875071 (OMIM: 607437) PREDICTED: G-protein c ( 345) 671 148.4 2.6e-35
NP_061124 (OMIM: 607437) G-protein coupled recepto ( 345) 671 148.4 2.6e-35
XP_005253478 (OMIM: 607437) PREDICTED: G-protein c ( 345) 671 148.4 2.6e-35
XP_016875072 (OMIM: 607437) PREDICTED: G-protein c ( 300) 652 144.4 3.5e-34
NP_003970 (OMIM: 604138) retinoic acid-induced pro ( 357) 652 144.4 4e-34
NP_061123 (OMIM: 605949) G-protein coupled recepto ( 453) 541 121.6 3.8e-27
NP_071319 (OMIM: 605949) G-protein coupled recepto ( 486) 541 121.6 4e-27
XP_005257571 (OMIM: 605949) PREDICTED: G-protein c ( 496) 541 121.6 4.1e-27
XP_016880345 (OMIM: 605949) PREDICTED: G-protein c ( 541) 541 121.7 4.4e-27
XP_016880344 (OMIM: 605949) PREDICTED: G-protein c ( 542) 541 121.7 4.4e-27
XP_005257569 (OMIM: 605949) PREDICTED: G-protein c ( 551) 541 121.7 4.4e-27
XP_011531946 (OMIM: 604099) PREDICTED: metabotropi ( 403) 217 54.7 4.6e-07
XP_011531947 (OMIM: 604099) PREDICTED: metabotropi ( 403) 217 54.7 4.6e-07
XP_011531945 (OMIM: 604099) PREDICTED: metabotropi ( 440) 217 54.8 5e-07
XP_011531949 (OMIM: 604099) PREDICTED: metabotropi ( 459) 217 54.8 5.1e-07
XP_011531948 (OMIM: 604099) PREDICTED: metabotropi ( 494) 217 54.8 5.4e-07
XP_011531941 (OMIM: 604099) PREDICTED: metabotropi ( 678) 217 54.9 7e-07
XP_011531943 (OMIM: 604099) PREDICTED: metabotropi ( 678) 217 54.9 7e-07
XP_011531939 (OMIM: 604099) PREDICTED: metabotropi ( 678) 217 54.9 7e-07
XP_011531940 (OMIM: 604099) PREDICTED: metabotropi ( 678) 217 54.9 7e-07
XP_011531942 (OMIM: 604099) PREDICTED: metabotropi ( 678) 217 54.9 7e-07
XP_011531938 (OMIM: 604099) PREDICTED: metabotropi ( 690) 217 54.9 7.1e-07
XP_011531937 (OMIM: 604099) PREDICTED: metabotropi ( 840) 217 55.0 8.2e-07
XP_016861760 (OMIM: 604099) PREDICTED: metabotropi ( 872) 217 55.0 8.5e-07
NP_000830 (OMIM: 604099) metabotropic glutamate re ( 872) 217 55.0 8.5e-07
NP_000831 (OMIM: 601115) metabotropic glutamate re ( 879) 192 49.8 3e-05
XP_011514410 (OMIM: 601116) PREDICTED: metabotropi ( 552) 163 43.7 0.0013
XP_011514405 (OMIM: 601116) PREDICTED: metabotropi ( 629) 163 43.7 0.0015
XP_016867569 (OMIM: 601116) PREDICTED: metabotropi ( 629) 163 43.7 0.0015
XP_016867567 (OMIM: 601116) PREDICTED: metabotropi ( 703) 163 43.8 0.0016
XP_016867568 (OMIM: 601116) PREDICTED: metabotropi ( 703) 163 43.8 0.0016
XP_016867566 (OMIM: 601116) PREDICTED: metabotropi ( 703) 163 43.8 0.0016
XP_016867564 (OMIM: 601116) PREDICTED: metabotropi ( 703) 163 43.8 0.0016
XP_016867565 (OMIM: 601116) PREDICTED: metabotropi ( 703) 163 43.8 0.0016
XP_011514404 (OMIM: 601116) PREDICTED: metabotropi ( 703) 163 43.8 0.0016
XP_011514403 (OMIM: 601116) PREDICTED: metabotropi ( 703) 163 43.8 0.0016
XP_011514397 (OMIM: 601116) PREDICTED: metabotropi ( 714) 163 43.8 0.0016
XP_011514396 (OMIM: 601116) PREDICTED: metabotropi ( 747) 163 43.8 0.0017
XP_006716001 (OMIM: 601116) PREDICTED: metabotropi ( 908) 163 43.8 0.002
XP_011514394 (OMIM: 601116) PREDICTED: metabotropi ( 908) 163 43.8 0.002
NP_000836 (OMIM: 601116) metabotropic glutamate re ( 908) 163 43.8 0.002
XP_016867563 (OMIM: 601116) PREDICTED: metabotropi ( 908) 163 43.8 0.002
NP_001120795 (OMIM: 601116) metabotropic glutamate ( 908) 163 43.8 0.002
XP_011514393 (OMIM: 601116) PREDICTED: metabotropi ( 908) 163 43.8 0.002
NP_001123535 (OMIM: 604099) metabotropic glutamate ( 254) 156 42.0 0.002
XP_005247894 (OMIM: 145980,239200,601198,601199,61 ( 917) 161 43.4 0.0027
>>XP_006721114 (OMIM: 605948) PREDICTED: G-protein coupl (403 aa)
initn: 2696 init1: 2696 opt: 2696 Z-score: 3012.1 bits: 566.2 E(85289): 4.9e-161
Smith-Waterman score: 2696; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KSD MFVASERKMRAHQVLTFLLLFVITSVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MFVASERKMRAHQVLTFLLLFVITSVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD AVAGAGALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTLGLFGLTFAFIIQEDET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AVAGAGALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTLGLFGLTFAFIIQEDET
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ICSVRRFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLVGLALCLMLVQVIIAVEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ICSVRRFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLVGLALCLMLVQVIIAVEW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LVLTVLRDTRPACAYEPMDFVMALIYDMVLLVVTLGLALFTLCGKFKRWKLNGAFLLITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LVLTVLRDTRPACAYEPMDFVMALIYDMVLLVVTLGLALFTLCGKFKRWKLNGAFLLITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD FLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAASGWVFVIFHAIPEIHCTLLPAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAASGWVFVIFHAIPEIHCTLLPAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QENTPNYFDTSQPRMRETAFEEDVQLPRAYMENKAFSMDEHNAALRTAGFPNGSLGKRPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QENTPNYFDTSQPRMRETAFEEDVQLPRAYMENKAFSMDEHNAALRTAGFPNGSLGKRPS
310 320 330 340 350 360
370 380 390 400
pF1KSD GSLGKRPSAPFRSNVYQPTEMAVVLNGGTIPTAPPSHTGRHLW
:::::::::::::::::::::::::::::::::::::::::::
XP_006 GSLGKRPSAPFRSNVYQPTEMAVVLNGGTIPTAPPSHTGRHLW
370 380 390 400
>>NP_057319 (OMIM: 605948) G-protein coupled receptor fa (403 aa)
initn: 2696 init1: 2696 opt: 2696 Z-score: 3012.1 bits: 566.2 E(85289): 4.9e-161
Smith-Waterman score: 2696; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KSD MFVASERKMRAHQVLTFLLLFVITSVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MFVASERKMRAHQVLTFLLLFVITSVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD AVAGAGALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTLGLFGLTFAFIIQEDET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AVAGAGALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTLGLFGLTFAFIIQEDET
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ICSVRRFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLVGLALCLMLVQVIIAVEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ICSVRRFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLVGLALCLMLVQVIIAVEW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LVLTVLRDTRPACAYEPMDFVMALIYDMVLLVVTLGLALFTLCGKFKRWKLNGAFLLITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LVLTVLRDTRPACAYEPMDFVMALIYDMVLLVVTLGLALFTLCGKFKRWKLNGAFLLITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD FLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAASGWVFVIFHAIPEIHCTLLPAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 FLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAASGWVFVIFHAIPEIHCTLLPAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QENTPNYFDTSQPRMRETAFEEDVQLPRAYMENKAFSMDEHNAALRTAGFPNGSLGKRPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 QENTPNYFDTSQPRMRETAFEEDVQLPRAYMENKAFSMDEHNAALRTAGFPNGSLGKRPS
310 320 330 340 350 360
370 380 390 400
pF1KSD GSLGKRPSAPFRSNVYQPTEMAVVLNGGTIPTAPPSHTGRHLW
:::::::::::::::::::::::::::::::::::::::::::
NP_057 GSLGKRPSAPFRSNVYQPTEMAVVLNGGTIPTAPPSHTGRHLW
370 380 390 400
>>XP_006721115 (OMIM: 605948) PREDICTED: G-protein coupl (403 aa)
initn: 2696 init1: 2696 opt: 2696 Z-score: 3012.1 bits: 566.2 E(85289): 4.9e-161
Smith-Waterman score: 2696; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KSD MFVASERKMRAHQVLTFLLLFVITSVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MFVASERKMRAHQVLTFLLLFVITSVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD AVAGAGALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTLGLFGLTFAFIIQEDET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AVAGAGALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTLGLFGLTFAFIIQEDET
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ICSVRRFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLVGLALCLMLVQVIIAVEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ICSVRRFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLVGLALCLMLVQVIIAVEW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LVLTVLRDTRPACAYEPMDFVMALIYDMVLLVVTLGLALFTLCGKFKRWKLNGAFLLITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LVLTVLRDTRPACAYEPMDFVMALIYDMVLLVVTLGLALFTLCGKFKRWKLNGAFLLITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD FLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAASGWVFVIFHAIPEIHCTLLPAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAASGWVFVIFHAIPEIHCTLLPAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD QENTPNYFDTSQPRMRETAFEEDVQLPRAYMENKAFSMDEHNAALRTAGFPNGSLGKRPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QENTPNYFDTSQPRMRETAFEEDVQLPRAYMENKAFSMDEHNAALRTAGFPNGSLGKRPS
310 320 330 340 350 360
370 380 390 400
pF1KSD GSLGKRPSAPFRSNVYQPTEMAVVLNGGTIPTAPPSHTGRHLW
:::::::::::::::::::::::::::::::::::::::::::
XP_006 GSLGKRPSAPFRSNVYQPTEMAVVLNGGTIPTAPPSHTGRHLW
370 380 390 400
>>NP_001291700 (OMIM: 605948) G-protein coupled receptor (534 aa)
initn: 2696 init1: 2696 opt: 2696 Z-score: 3010.4 bits: 566.3 E(85289): 6.1e-161
Smith-Waterman score: 2696; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:132-534)
10 20 30
pF1KSD MFVASERKMRAHQVLTFLLLFVITSVASEN
::::::::::::::::::::::::::::::
NP_001 KLLLMNPPWSVAWGQEGFRAGTPGSRYLPRMFVASERKMRAHQVLTFLLLFVITSVASEN
110 120 130 140 150 160
40 50 60 70 80 90
pF1KSD ASTSRGCGLDLLPQYVSLCDLDAIWGIVVEAVAGAGALITLLLMLILLVRLPFIKEKEKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASTSRGCGLDLLPQYVSLCDLDAIWGIVVEAVAGAGALITLLLMLILLVRLPFIKEKEKK
170 180 190 200 210 220
100 110 120 130 140 150
pF1KSD SPVGLHFLFLLGTLGLFGLTFAFIIQEDETICSVRRFLWGVLFALCFSCLLSQAWRVRRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPVGLHFLFLLGTLGLFGLTFAFIIQEDETICSVRRFLWGVLFALCFSCLLSQAWRVRRL
230 240 250 260 270 280
160 170 180 190 200 210
pF1KSD VRHGTGPAGWQLVGLALCLMLVQVIIAVEWLVLTVLRDTRPACAYEPMDFVMALIYDMVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRHGTGPAGWQLVGLALCLMLVQVIIAVEWLVLTVLRDTRPACAYEPMDFVMALIYDMVL
290 300 310 320 330 340
220 230 240 250 260 270
pF1KSD LVVTLGLALFTLCGKFKRWKLNGAFLLITAFLSVLIWVAWMTMYLFGNVKLQQGDAWNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVVTLGLALFTLCGKFKRWKLNGAFLLITAFLSVLIWVAWMTMYLFGNVKLQQGDAWNDP
350 360 370 380 390 400
280 290 300 310 320 330
pF1KSD TLAITLAASGWVFVIFHAIPEIHCTLLPALQENTPNYFDTSQPRMRETAFEEDVQLPRAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLAITLAASGWVFVIFHAIPEIHCTLLPALQENTPNYFDTSQPRMRETAFEEDVQLPRAY
410 420 430 440 450 460
340 350 360 370 380 390
pF1KSD MENKAFSMDEHNAALRTAGFPNGSLGKRPSGSLGKRPSAPFRSNVYQPTEMAVVLNGGTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MENKAFSMDEHNAALRTAGFPNGSLGKRPSGSLGKRPSAPFRSNVYQPTEMAVVLNGGTI
470 480 490 500 510 520
400
pF1KSD PTAPPSHTGRHLW
:::::::::::::
NP_001 PTAPPSHTGRHLW
530
>>XP_016875071 (OMIM: 607437) PREDICTED: G-protein coupl (345 aa)
initn: 638 init1: 360 opt: 671 Z-score: 755.0 bits: 148.4 E(85289): 2.6e-35
Smith-Waterman score: 671; 35.2% identity (67.3% similar) in 324 aa overlap (35-351:3-317)
10 20 30 40 50 60
pF1KSD SERKMRAHQVLTFLLLFVITSVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVEAVAG
. : .. .: ::: .. :::..:..:
XP_016 MYKDC-IESTGDYFLLCDAEGPWGIILESLAI
10 20 30
70 80 90 100 110 120
pF1KSD AGALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTLGLFGLTFAFIIQEDETICSV
: ..:.::.: .: . :.. . . . ..::::..::::::.:::::. .. :
XP_016 LGIVVTILLLLAFLFLMRKIQDCSQWNVLPTQLLFLLSVLGLFGLAFAFIIELNQQTAPV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD RRFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLV-GLALCLMLVQVIIAVEWLVL
: ::.::::::::::::..: . .::: : .: . .:. :.:.:::.:...:
XP_016 RYFLFGVLFALCFSCLLAHASNLVKLVR-GCVSFSWTTILCIAIGCSLLQIIIATEYVTL
100 110 120 130 140 150
190 200 210 220 230
pF1KSD TVLR-----DTRPACAYEPMDFVMALIYDMVLLVVTLGLALFTLCGKFKRWKLNGAFLLI
. : . : : . .:::. :.: . :...:. .. :.:: . :: .: ...:
XP_016 IMTRGMMFVNMTP-CQLN-VDFVVLLVYVLFLMALTFFVSKATFCGPCENWKQHGRLIFI
160 170 180 190 200
240 250 260 270 280 290
pF1KSD TAFLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAASGWVFVIFHAIPEIHCTLLP
:...:..:::.:..: : :: ..:. :.::.. :.:....:::.... .::. : :
XP_016 TVLFSIIIWVVWISMLLRGNPQFQRQPQWDDPVVCIALVTNAWVFLLLYIVPEL-CILYR
210 220 230 240 250 260
300 310 320 330 340 350
pF1KSD ALQENTPNYFDTSQPRMRETAFE-EDVQLPRAYMENKAFSMDEHNAALRTAGFPNGSLGK
. ... : .. . .:. :. .: :: . : :...:: . : :
XP_016 SCRQECPLQGNACPVTAYQHSFQVENQELSRARDSDGA----EEDVALTSYGTPIQPQTV
270 280 290 300 310 320
360 370 380 390 400
pF1KSD RPSGSLGKRPSAPFRSNVYQPTEMAVVLNGGTIPTAPPSHTGRHLW
XP_016 DPTQECFIPQAKLSPQQDAGGV
330 340
>>NP_061124 (OMIM: 607437) G-protein coupled receptor fa (345 aa)
initn: 638 init1: 360 opt: 671 Z-score: 755.0 bits: 148.4 E(85289): 2.6e-35
Smith-Waterman score: 671; 35.2% identity (67.3% similar) in 324 aa overlap (35-351:3-317)
10 20 30 40 50 60
pF1KSD SERKMRAHQVLTFLLLFVITSVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVEAVAG
. : .. .: ::: .. :::..:..:
NP_061 MYKDC-IESTGDYFLLCDAEGPWGIILESLAI
10 20 30
70 80 90 100 110 120
pF1KSD AGALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTLGLFGLTFAFIIQEDETICSV
: ..:.::.: .: . :.. . . . ..::::..::::::.:::::. .. :
NP_061 LGIVVTILLLLAFLFLMRKIQDCSQWNVLPTQLLFLLSVLGLFGLAFAFIIELNQQTAPV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD RRFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLV-GLALCLMLVQVIIAVEWLVL
: ::.::::::::::::..: . .::: : .: . .:. :.:.:::.:...:
NP_061 RYFLFGVLFALCFSCLLAHASNLVKLVR-GCVSFSWTTILCIAIGCSLLQIIIATEYVTL
100 110 120 130 140 150
190 200 210 220 230
pF1KSD TVLR-----DTRPACAYEPMDFVMALIYDMVLLVVTLGLALFTLCGKFKRWKLNGAFLLI
. : . : : . .:::. :.: . :...:. .. :.:: . :: .: ...:
NP_061 IMTRGMMFVNMTP-CQLN-VDFVVLLVYVLFLMALTFFVSKATFCGPCENWKQHGRLIFI
160 170 180 190 200
240 250 260 270 280 290
pF1KSD TAFLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAASGWVFVIFHAIPEIHCTLLP
:...:..:::.:..: : :: ..:. :.::.. :.:....:::.... .::. : :
NP_061 TVLFSIIIWVVWISMLLRGNPQFQRQPQWDDPVVCIALVTNAWVFLLLYIVPEL-CILYR
210 220 230 240 250 260
300 310 320 330 340 350
pF1KSD ALQENTPNYFDTSQPRMRETAFE-EDVQLPRAYMENKAFSMDEHNAALRTAGFPNGSLGK
. ... : .. . .:. :. .: :: . : :...:: . : :
NP_061 SCRQECPLQGNACPVTAYQHSFQVENQELSRARDSDGA----EEDVALTSYGTPIQPQTV
270 280 290 300 310 320
360 370 380 390 400
pF1KSD RPSGSLGKRPSAPFRSNVYQPTEMAVVLNGGTIPTAPPSHTGRHLW
NP_061 DPTQECFIPQAKLSPQQDAGGV
330 340
>>XP_005253478 (OMIM: 607437) PREDICTED: G-protein coupl (345 aa)
initn: 638 init1: 360 opt: 671 Z-score: 755.0 bits: 148.4 E(85289): 2.6e-35
Smith-Waterman score: 671; 35.2% identity (67.3% similar) in 324 aa overlap (35-351:3-317)
10 20 30 40 50 60
pF1KSD SERKMRAHQVLTFLLLFVITSVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVEAVAG
. : .. .: ::: .. :::..:..:
XP_005 MYKDC-IESTGDYFLLCDAEGPWGIILESLAI
10 20 30
70 80 90 100 110 120
pF1KSD AGALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTLGLFGLTFAFIIQEDETICSV
: ..:.::.: .: . :.. . . . ..::::..::::::.:::::. .. :
XP_005 LGIVVTILLLLAFLFLMRKIQDCSQWNVLPTQLLFLLSVLGLFGLAFAFIIELNQQTAPV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD RRFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLV-GLALCLMLVQVIIAVEWLVL
: ::.::::::::::::..: . .::: : .: . .:. :.:.:::.:...:
XP_005 RYFLFGVLFALCFSCLLAHASNLVKLVR-GCVSFSWTTILCIAIGCSLLQIIIATEYVTL
100 110 120 130 140 150
190 200 210 220 230
pF1KSD TVLR-----DTRPACAYEPMDFVMALIYDMVLLVVTLGLALFTLCGKFKRWKLNGAFLLI
. : . : : . .:::. :.: . :...:. .. :.:: . :: .: ...:
XP_005 IMTRGMMFVNMTP-CQLN-VDFVVLLVYVLFLMALTFFVSKATFCGPCENWKQHGRLIFI
160 170 180 190 200
240 250 260 270 280 290
pF1KSD TAFLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAASGWVFVIFHAIPEIHCTLLP
:...:..:::.:..: : :: ..:. :.::.. :.:....:::.... .::. : :
XP_005 TVLFSIIIWVVWISMLLRGNPQFQRQPQWDDPVVCIALVTNAWVFLLLYIVPEL-CILYR
210 220 230 240 250 260
300 310 320 330 340 350
pF1KSD ALQENTPNYFDTSQPRMRETAFE-EDVQLPRAYMENKAFSMDEHNAALRTAGFPNGSLGK
. ... : .. . .:. :. .: :: . : :...:: . : :
XP_005 SCRQECPLQGNACPVTAYQHSFQVENQELSRARDSDGA----EEDVALTSYGTPIQPQTV
270 280 290 300 310 320
360 370 380 390 400
pF1KSD RPSGSLGKRPSAPFRSNVYQPTEMAVVLNGGTIPTAPPSHTGRHLW
XP_005 DPTQECFIPQAKLSPQQDAGGV
330 340
>>XP_016875072 (OMIM: 607437) PREDICTED: G-protein coupl (300 aa)
initn: 638 init1: 360 opt: 652 Z-score: 734.6 bits: 144.4 E(85289): 3.5e-34
Smith-Waterman score: 652; 35.5% identity (68.4% similar) in 301 aa overlap (35-328:3-298)
10 20 30 40 50 60
pF1KSD SERKMRAHQVLTFLLLFVITSVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVEAVAG
. : .. .: ::: .. :::..:..:
XP_016 MYKDC-IESTGDYFLLCDAEGPWGIILESLAI
10 20 30
70 80 90 100 110 120
pF1KSD AGALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTLGLFGLTFAFIIQEDETICSV
: ..:.::.: .: . :.. . . . ..::::..::::::.:::::. .. :
XP_016 LGIVVTILLLLAFLFLMRKIQDCSQWNVLPTQLLFLLSVLGLFGLAFAFIIELNQQTAPV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD RRFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLV-GLALCLMLVQVIIAVEWLVL
: ::.::::::::::::..: . .::: : .: . .:. :.:.:::.:...:
XP_016 RYFLFGVLFALCFSCLLAHASNLVKLVR-GCVSFSWTTILCIAIGCSLLQIIIATEYVTL
100 110 120 130 140 150
190 200 210 220 230
pF1KSD TVLR-----DTRPACAYEPMDFVMALIYDMVLLVVTLGLALFTLCGKFKRWKLNGAFLLI
. : . : : . .:::. :.: . :...:. .. :.:: . :: .: ...:
XP_016 IMTRGMMFVNMTP-CQLN-VDFVVLLVYVLFLMALTFFVSKATFCGPCENWKQHGRLIFI
160 170 180 190 200
240 250 260 270 280 290
pF1KSD TAFLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAASGWVFVIFHAIPEIHCTLLP
:...:..:::.:..: : :: ..:. :.::.. :.:....:::.... .::. : :
XP_016 TVLFSIIIWVVWISMLLRGNPQFQRQPQWDDPVVCIALVTNAWVFLLLYIVPEL-CILYR
210 220 230 240 250 260
300 310 320 330 340 350
pF1KSD ALQENTPNYFDTSQPRMRETAFE-EDVQLPRAYMENKAFSMDEHNAALRTAGFPNGSLGK
. ... : .. . .:. :. .: :
XP_016 SCRQECPLQGNACPVTAYQHSFQVENQELSRDC
270 280 290 300
360 370 380 390 400
pF1KSD RPSGSLGKRPSAPFRSNVYQPTEMAVVLNGGTIPTAPPSHTGRHLW
>>NP_003970 (OMIM: 604138) retinoic acid-induced protein (357 aa)
initn: 586 init1: 404 opt: 652 Z-score: 733.6 bits: 144.4 E(85289): 4e-34
Smith-Waterman score: 670; 37.4% identity (66.4% similar) in 321 aa overlap (36-349:8-313)
10 20 30 40 50 60
pF1KSD ERKMRAHQVLTFLLLFVITSVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVEAVAGA
:: : .: ::: ::::.:.:: :
NP_003 MATTVPDGCRNGLKSKYYRLCDKAEAWGIVLETVATA
10 20 30
70 80 90 100 110 120
pF1KSD GALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTLGLFGLTFAFIIQEDETICSVR
:.. .. .:: : . . ........ . .::::::.::.::::::::: : . .:
NP_003 GVVTSVAFMLTLPILVCKVQDSNRRKMLPTQFLFLLGVLGIFGLTFAFIIGLDGSTGPTR
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD RFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLV-GLALCLMLVQVIIAVEWLVLT
::.:.::..::::::..: . .::: : : . .. :::. . ::: .::.:..:::
NP_003 FFLFGILFSICFSCLLAHAVSLTKLVR-GRKPLSLLVILGLAVGFSLVQDVIAIEYIVLT
100 110 120 130 140 150
190 200 210 220 230
pF1KSD VLRD-----TRPACAYEPMDFVMALIYDMVLLVVTLGLALFTLCGKFKRWKLNGAFLLIT
. : .. . . :::. : : . :...:. .. ::.::.: :: .:: . .:
NP_003 MNRTNVNVFSELSAPRRNEDFVLLLTYVLFLMALTFLMSSFTFCGSFTGWKRHGAHIYLT
160 170 180 190 200 210
240 250 260 270 280 290
pF1KSD AFLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAASGWVFVIFHAIPEIHCTLLPA
.::. :::::.:. .. . . :.: :. .:::.::::.. .. ::. : .
NP_003 MLLSIAIWVAWITLLMLPDFDRR----WDDTILSSALAANGWVFLLAYVSPEF---WLLT
220 230 240 250 260
300 310 320 330 340 350
pF1KSD LQENTPNYFDTSQPRMRETAFEEDVQLPRAY-MENKAFSMDEHNAALRTAGFPNGSLGKR
:.: .: : : :: . . ..: .::.:.:..: . ... .:
NP_003 KQRNPMDY-----PV--EDAFCKPQLVKKSYGVENRAYSQEEITQGFEETGDTLYAPYST
270 280 290 300 310 320
360 370 380 390 400
pF1KSD PSGSLGKRPSAPFRSNVYQPTEMAVVLNGGTIPTAPPSHTGRHLW
NP_003 HFQLQNQPPQKEFSIPRAHAWPSPYKDYEVKKEGS
330 340 350
>>NP_061123 (OMIM: 605949) G-protein coupled receptor fa (453 aa)
initn: 944 init1: 534 opt: 541 Z-score: 608.3 bits: 121.6 E(85289): 3.8e-27
Smith-Waterman score: 945; 40.5% identity (68.9% similar) in 395 aa overlap (8-384:12-390)
10 20 30 40 50
pF1KSD MFVASERKMRAHQVLTFLL---LFVITSVASENASTSRGCGLDLLPQYVSLCDLDA
.: :..:.. : ::.. .. ... . ::. : : : .::: ..
NP_061 MGTQPEPGLGARMAIHKALVMCLGLPLFLFPGAWAQG-HVPPGCSQGLNPLYYNLCDRSG
10 20 30 40 50
60 70 80 90 100 110
pF1KSD IWGIVVEAVAGAGALITLLLMLILLVRLPFIKEKEKKSPVGLHFLFLLGTLGLFGLTFAF
::::.::::::: . :..: .::.. :::... .:.: .: . .::::::::: :.::
NP_061 AWGIVLEAVAGAGIVTTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFAC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KSD IIQEDETICSVRRFLWGVLFALCFSCLLSQAWRVRRLVRHGTGPAGWQLVGLALCLMLVQ
... : . :. ::::.:::::.::::: .... . :.:.. :: :: . .:: : ::.
NP_061 VVKPDFSTCASRRFLFGVLFAICFSCLAAHVFALNFLARKNHGPRGWVIFTVALLLTLVE
120 130 140 150 160 170
180 190 200 210
pF1KSD VIIAVEWLVLTVLRDTRPA---------------CAYEPMDFVMALIYDMVLLVVTLGLA
::: .:::..:..: . . :: ::::::::: :.::. .. :
NP_061 VIINTEWLIITLVRGSGEGGPQGNSSAGWAVASPCAIANMDFVMALIYVMLLLLGAFLGA
180 190 200 210 220 230
220 230 240 250 260 270
pF1KSD LFTLCGKFKRWKLNGAFLLITAFLSVLIWVAWMTMYLFGNVKLQQGDAWNDPTLAITLAA
.:::..:::. .:.:.:.:. :: :::.:..:: .:: : ... .:.::::::.:::
NP_061 WPALCGRYKRWRKHGVFVLLTTATSVAIWVVWIVMYTYGN-KQHNSPTWDDPTLAIALAA
240 250 260 270 280 290
280 290 300 310 320 330
pF1KSD SGWVFVIFHAIPEIHCTLLPALQENTPNYFDTSQPRMRETAFEEDVQLPRAYMENKAFSM
..:.::.:..:::. . . ... . . .. :: ..:. . ..:::::::
NP_061 NAWAFVLFYVIPEVSQVTKSSPEQSYQGDMYPTRGVGYETILKEQ-KGQSMFVENKAFSM
300 310 320 330 340 350
340 350 360 370 380 390
pF1KSD DEHNAALRTAGFPNGSLGKRPSGSLGKRPSAPFRSNVYQPTEMAVVLNGGTIPTAPPSHT
:: :: : .. .: :. . ..::::::::..
NP_061 DEPVAAKRPVSPYSGYNGQ-------------LLTSVYQPTEMALMHKVPSEGAYDIILP
360 370 380 390 400
400
pF1KSD GRHLW
NP_061 RATANSQVMGSANSTLRAEDMYSAQSHQAATPPKDGKNSQVFRNPYVWD
410 420 430 440 450
403 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:43:02 2016 done: Thu Nov 3 08:43:03 2016
Total Scan time: 8.610 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]