Result of FASTA (ccds) for
pF1KSDF0168
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDF0168, 567 aa
1>>>pF1KSDF0168 567 - 567 aa - 567 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6646+/-0.000837; mu= 17.3022+/- 0.050
mean_var=76.4387+/-15.755, 0's: 0 Z-trim(107.7): 23 B-trim: 0 in 0/50
Lambda= 0.146696
statistics sampled from 9735 (9754) to 9735 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.3), width: 16
Scan time: 3.670
The best scores are: opt bits E(32554)
CCDS12787.1 IL4I1 gene_id:259307|Hs108|chr19 ( 567) 3817 817.4 0
CCDS12786.1 IL4I1 gene_id:259307|Hs108|chr19 ( 589) 3793 812.4 0
CCDS14261.1 MAOB gene_id:4129|Hs108|chrX ( 520) 400 94.2 4.1e-19
CCDS14260.1 MAOA gene_id:4128|Hs108|chrX ( 527) 356 84.9 2.6e-16
>>CCDS12787.1 IL4I1 gene_id:259307|Hs108|chr19 (567 aa)
initn: 3817 init1: 3817 opt: 3817 Z-score: 4364.3 bits: 817.4 E(32554): 0
Smith-Waterman score: 3817; 100.0% identity (100.0% similar) in 567 aa overlap (1-567:1-567)
10 20 30 40 50 60
pF1KSD MAPLALHLLVLVPILLSLVASQDWKAERSQDPFEKCMQDPDYEQLLKVVTWGLNRTLKPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAPLALHLLVLVPILLSLVASQDWKAERSQDPFEKCMQDPDYEQLLKVVTWGLNRTLKPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RVIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRIFTYRDQNTGWIGELGAMRMPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RVIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRIFTYRDQNTGWIGELGAMRMPSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD HRILHKLCQGLGLNLTKFTQYDKNTWTEVHEVKLRNYVVEKVPEKLGYALRPQEKGHSPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HRILHKLCQGLGLNLTKFTQYDKNTWTEVHEVKLRNYVVEKVPEKLGYALRPQEKGHSPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD DIYQMALNQALKDLKALGCRKAMKKFERHTLLEYLLGEGNLSRPAVQLLGDVMSEDGFFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DIYQMALNQALKDLKALGCRKAMKKFERHTLLEYLLGEGNLSRPAVQLLGDVMSEDGFFY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LSFAEALRAHSCLSDRLQYSRIVGGWDLLPRALLSSLSGLVLLNAPVVAMTQGPHDVHVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LSFAEALRAHSCLSDRLQYSRIVGGWDLLPRALLSSLSGLVLLNAPVVAMTQGPHDVHVQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IETSPPARNLKVLKADVVLLTASGPAVKRITFSPPLPRHMQEALRRLHYVPATKVFLSFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IETSPPARNLKVLKADVVLLTASGPAVKRITFSPPLPRHMQEALRRLHYVPATKVFLSFR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RPFWREEHIEGGHSNTDRPSRMIFYPPPREGALLLASYTWSDAAAAFAGLSREEALRLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RPFWREEHIEGGHSNTDRPSRMIFYPPPREGALLLASYTWSDAAAAFAGLSREEALRLAL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD DDVAALHGPVVRQLWDGTGVVKRWAEDQHSQGGFVVQPPALWQTEKDDWTVPYGRIYFAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DDVAALHGPVVRQLWDGTGVVKRWAEDQHSQGGFVVQPPALWQTEKDDWTVPYGRIYFAG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD EHTAYPHGWVETAVKSALRAAIKINSRKGPASDTASPEGHASDMEGQGHVHGVASSPSHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EHTAYPHGWVETAVKSALRAAIKINSRKGPASDTASPEGHASDMEGQGHVHGVASSPSHD
490 500 510 520 530 540
550 560
pF1KSD LAKEEGSHPPVQGQLSLQNTTHTRTSH
:::::::::::::::::::::::::::
CCDS12 LAKEEGSHPPVQGQLSLQNTTHTRTSH
550 560
>>CCDS12786.1 IL4I1 gene_id:259307|Hs108|chr19 (589 aa)
initn: 3793 init1: 3793 opt: 3793 Z-score: 4336.6 bits: 812.4 E(32554): 0
Smith-Waterman score: 3793; 99.6% identity (99.8% similar) in 565 aa overlap (3-567:25-589)
10 20 30
pF1KSD MAPLALHLLVLVPILLSLVASQDWKAERSQDPFEKCMQ
: .:::::::::::::::::::::::::::::::::
CCDS12 MPNDDFCPGLTIKAMGAERAPQRQPCTLHLLVLVPILLSLVASQDWKAERSQDPFEKCMQ
10 20 30 40 50 60
40 50 60 70 80 90
pF1KSD DPDYEQLLKVVTWGLNRTLKPQRVIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DPDYEQLLKVVTWGLNRTLKPQRVIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRI
70 80 90 100 110 120
100 110 120 130 140 150
pF1KSD FTYRDQNTGWIGELGAMRMPSSHRILHKLCQGLGLNLTKFTQYDKNTWTEVHEVKLRNYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FTYRDQNTGWIGELGAMRMPSSHRILHKLCQGLGLNLTKFTQYDKNTWTEVHEVKLRNYV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KSD VEKVPEKLGYALRPQEKGHSPEDIYQMALNQALKDLKALGCRKAMKKFERHTLLEYLLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VEKVPEKLGYALRPQEKGHSPEDIYQMALNQALKDLKALGCRKAMKKFERHTLLEYLLGE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KSD GNLSRPAVQLLGDVMSEDGFFYLSFAEALRAHSCLSDRLQYSRIVGGWDLLPRALLSSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GNLSRPAVQLLGDVMSEDGFFYLSFAEALRAHSCLSDRLQYSRIVGGWDLLPRALLSSLS
250 260 270 280 290 300
280 290 300 310 320 330
pF1KSD GLVLLNAPVVAMTQGPHDVHVQIETSPPARNLKVLKADVVLLTASGPAVKRITFSPPLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GLVLLNAPVVAMTQGPHDVHVQIETSPPARNLKVLKADVVLLTASGPAVKRITFSPPLPR
310 320 330 340 350 360
340 350 360 370 380 390
pF1KSD HMQEALRRLHYVPATKVFLSFRRPFWREEHIEGGHSNTDRPSRMIFYPPPREGALLLASY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HMQEALRRLHYVPATKVFLSFRRPFWREEHIEGGHSNTDRPSRMIFYPPPREGALLLASY
370 380 390 400 410 420
400 410 420 430 440 450
pF1KSD TWSDAAAAFAGLSREEALRLALDDVAALHGPVVRQLWDGTGVVKRWAEDQHSQGGFVVQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TWSDAAAAFAGLSREEALRLALDDVAALHGPVVRQLWDGTGVVKRWAEDQHSQGGFVVQP
430 440 450 460 470 480
460 470 480 490 500 510
pF1KSD PALWQTEKDDWTVPYGRIYFAGEHTAYPHGWVETAVKSALRAAIKINSRKGPASDTASPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PALWQTEKDDWTVPYGRIYFAGEHTAYPHGWVETAVKSALRAAIKINSRKGPASDTASPE
490 500 510 520 530 540
520 530 540 550 560
pF1KSD GHASDMEGQGHVHGVASSPSHDLAKEEGSHPPVQGQLSLQNTTHTRTSH
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GHASDMEGQGHVHGVASSPSHDLAKEEGSHPPVQGQLSLQNTTHTRTSH
550 560 570 580
>>CCDS14261.1 MAOB gene_id:4129|Hs108|chrX (520 aa)
initn: 350 init1: 197 opt: 400 Z-score: 456.6 bits: 94.2 E(32554): 4.1e-19
Smith-Waterman score: 415; 24.6% identity (55.3% similar) in 488 aa overlap (62-527:7-475)
40 50 60 70 80 90
pF1KSD PFEKCMQDPDYEQLLKVVTWGLNRTLKPQRVIVVGAGVAGLVAAKVLSDAGHKVTILEAD
:.:::.:..:..:::.: :.: .:..:::
CCDS14 MSNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEAR
10 20 30
100 110 120 130 140 150
pF1KSD NRIGGRIFTYRDQNTGWIGELGAMRMPSSHRILHKLCQGLGLNLTKFTQYDKNTWTEVHE
.:.::: .: :.:.. .. :.. :...::: .: . :::. : .. .. .:.
CCDS14 DRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRIL-RLAKELGLETYKVNEVER----LIHH
40 50 60 70 80 90
160 170 180 190 200
pF1KSD VKLRNYVVEKVPEKLGYALRPQEKGHSPEDIYQMALNQALKDLKALGCRKA--MKKFERH
:: ..: : . . . . .. . .... ... . . :: ....
CCDS14 VKGKSY-----PFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNM
100 110 120 130 140
210 220 230 240 250
pF1KSD TLLEYLLGEGNLSRPAVQL---------LGDVMSEDGFFYLSFAEALRAHSCL---SDRL
:. : :: . .. : :: ... .....: ... . . . ..
CCDS14 TMKE-LLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGG
150 160 170 180 190 200
260 270 280 290 300 310
pF1KSD QYSRIVGGWDLLPRALLSSLSGLVLLNAPVVAMTQGPHDVHVQIETSPPARNLKVLKADV
: ..::: . . ... :. : :. ::. . : ..: :. . : .. .:
CCDS14 QERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVE------TLNHEMYEAKY
210 220 230 240 250
320 330 340 350 360 370
pF1KSD VLLTASGPAVK-RITFSPPLPRHMQEALRRLHYVPATKVFLSFRRPFWREEHIEGGH--S
:. .: :.. .: :.:::: .. . :. . : .. ...::::.. : .
CCDS14 VI-SAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIID
260 270 280 290 300 310
380 390 400 410 420 430
pF1KSD NTDRPSRMIFYPPPREGALL-LASYTWSDAAAAFAGLSREEALRLALDDVAALHGPVVRQ
. . : . . :: . .. . : .: :..:: :. . : . : . .
CCDS14 GEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSL-EA
320 330 340 350 360 370
440 450 460 470 480 490
pF1KSD LWDGTGVVKRWAEDQHSQGGFVVQ-PPALWQTEKDDWTVPYGRIYFAGEHTA-YPHGWVE
: : : :.:.: : ... ::.. : :::::: .:: . :..:
CCDS14 LEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYME
380 390 400 410 420 430
500 510 520 530 540
pF1KSD TAVKSALRAAIKINSRKG--PASDTASPEGHASDMEGQGHVHGVASSPSHDLAKEEGSHP
::... ::: .: : : .. . : .. :. .:
CCDS14 GAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLIG
440 450 460 470 480 490
550 560
pF1KSD PVQGQLSLQNTTHTRTSH
CCDS14 LTTIFSATALGFLAHKRGLLVRV
500 510 520
>>CCDS14260.1 MAOA gene_id:4128|Hs108|chrX (527 aa)
initn: 331 init1: 189 opt: 356 Z-score: 406.2 bits: 84.9 E(32554): 2.6e-16
Smith-Waterman score: 365; 25.3% identity (52.2% similar) in 490 aa overlap (62-513:16-468)
40 50 60 70 80 90
pF1KSD PFEKCMQDPDYEQLLKVVTWGLNRTLKPQRVIVVGAGVAGLVAAKVLSDAGHKVTILEAD
:.:.:.:..:: :::.:.. : .: .:::
CCDS14 MENQEKASIAGHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLEAR
10 20 30 40
100 110 120 130 140
pF1KSD NRIGGRIFTYRDQNTGWIGELGAMRMPSSHRILHKLCQGLGLNLTK------FTQYDKN-
.:.::: .: :.... .. ::. :...::: .: . ::.. : ..:: :.
CCDS14 DRVGGRTYTIRNEHVDYVDVGGAYVGPTQNRIL-RLSKELGIETYKVNVSERLVQYVKGK
50 60 70 80 90 100
150 160 170 180 190
pF1KSD ----------TWTEVHEVKLRNYVVEKVPEKLGYAL---RPQEKGHSPEDIYQMALNQAL
.:. . . : . .. ...: . : : :. : .. ....
CCDS14 TYPFRGAFPPVWNPIAYLDYNN--LWRTIDNMGKEIPTDAPWEAQHA--DKWD---KMTM
110 120 130 140 150
200 210 220 230 240
pF1KSD KDLKALGC-RKAMKKFERHTLLEYLLGEGNL-SRP----AVQLLGDVMSEDGFFYLSFAE
:.: : :. ..: ::. . :. :.: :. .: : . :
CCDS14 KELIDKICWTKTARRFA------YLFVNINVTSEPHEVSALWFLWYVKQCGG--------
160 170 180 190 200
250 260 270 280 290 300
pF1KSD ALRAHSCLSDRLQYSRIVGGWDLLPRALLSSLSGLVLLNAPVVAMTQGPHDVHVQIETSP
. : : ... : ..::: . . ... :. : :: ::. . :. .. .. .
CCDS14 TTRIFS-VTNGGQERKFVGGSGQVSERIMDLLGDQVKLNHPVTHVDQSSDNIIIETLNHE
210 220 230 240 250 260
310 320 330 340 350 360
pF1KSD PARNLKVLKADVVLLTASGPAVKRITFSPPLPRHMQEALRRLHYVPATKVFLSFRRPFWR
. :..: ::: .: : : :: . .. ..:: . . : .. ... ::.
CCDS14 HYECKYVINAIPPTLTA------KIHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWK
270 280 290 300 310
370 380 390 400 410
pF1KSD EEHIEGGH--SNTDRPSRMIFYPPPREGAL-LLASYTWSDAAAAFAGLSRE-------EA
.. : . : : . . .:.: . .. . : .: : .: :
CCDS14 KKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICEL
320 330 340 350 360 370
420 430 440 450 460 470
pF1KSD LRLALDDVAALHGPVVRQLWDGTGVVKRWAEDQHSQGGFVVQ-PPALWQTEKDDWTVPYG
.: . ::: :: . : : :.:.: : ... ::.. : :
CCDS14 YAKVLGSQEALH-PVHYEE-------KNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVG
380 390 400 410 420
480 490 500 510 520 530
pF1KSD RIYFAGEHTAYP-HGWVETAVKSALRAAIKINSRKGPASDTASPEGHASDMEGQGHVHGV
::.::: .:: :..: ::... ::: .. . : ...
CCDS14 RIFFAGTETATKWSGYMEGAVEAGERAAREVLNGLGKVTEKDIWVQEPESKDVPAVEITH
430 440 450 460 470 480
540 550 560
pF1KSD ASSPSHDLAKEEGSHPPVQGQLSLQNTTHTRTSH
CCDS14 TFWERNLPSVSGLLKIIGFSTSVTALGFVLYKYKLLPRS
490 500 510 520
567 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:53:59 2016 done: Thu Nov 3 08:53:59 2016
Total Scan time: 3.670 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]