FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1776, 284 aa
  1>>>pF1KE1776 284 - 284 aa - 284 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8778+/-0.000393; mu= 17.0593+/- 0.024
 mean_var=62.4156+/-13.206, 0's: 0 Z-trim(112.3): 29  B-trim: 511 in 1/53
 Lambda= 0.162341
 statistics sampled from 21142 (21153) to 21142 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.248), width:  16
 Scan time:  7.240

The best scores are:                                      opt bits E(85289)
NP_036537 (OMIM: 605851) protein-S-isoprenylcystei ( 284) 1919 458.1 8.4e-129
XP_011539442 (OMIM: 605851) PREDICTED: protein-S-i ( 188) 1277 307.7 1.1e-83


>>NP_036537 (OMIM: 605851) protein-S-isoprenylcysteine O  (284 aa)
 initn: 1919 init1: 1919 opt: 1919  Z-score: 2433.4  bits: 458.1 E(85289): 8.4e-129
Smith-Waterman score: 1919; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)

               10        20        30        40        50        60
pF1KE1 MAGCAARAPPGSEARLSLATFLLGASVLALPLLTRAGLQGRTGLALYVAGLNALLLLLYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MAGCAARAPPGSEARLSLATFLLGASVLALPLLTRAGLQGRTGLALYVAGLNALLLLLYR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PPRYQIAIRACFLGFVFGCGTLLSFSQSSWSHFGWYMCSLSLFHYSEYLVTAVNNPKSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PPRYQIAIRACFLGFVFGCGTLLSFSQSSWSHFGWYMCSLSLFHYSEYLVTAVNNPKSLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LDSFLLNHSLEYTVAALSSWLEFTLENIFWPELKQITWLSVTGLLMVVFGECLRKAAMFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LDSFLLNHSLEYTVAALSSWLEFTLENIFWPELKQITWLSVTGLLMVVFGECLRKAAMFT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 AGSNFNHVVQNEKSDTHTLVTSGVYAWFRHPSYVGWFYWSIGTQVMLCNPICGVSYALTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AGSNFNHVVQNEKSDTHTLVTSGVYAWFRHPSYVGWFYWSIGTQVMLCNPICGVSYALTV
              190       200       210       220       230       240

              250       260       270       280    
pF1KE1 WRFFRDRTEEEEISLIHFFGEEYLEYKKRVPTGLPFIKGVKVDL
       ::::::::::::::::::::::::::::::::::::::::::::
NP_036 WRFFRDRTEEEEISLIHFFGEEYLEYKKRVPTGLPFIKGVKVDL
              250       260       270       280    

>>XP_011539442 (OMIM: 605851) PREDICTED: protein-S-isopr  (188 aa)
 initn: 1277 init1: 1277 opt: 1277  Z-score: 1623.3  bits: 307.7 E(85289): 1.1e-83
Smith-Waterman score: 1277; 100.0% identity (100.0% similar) in 188 aa overlap (97-284:1-188)

         70        80        90       100       110       120      
pF1KE1 AIRACFLGFVFGCGTLLSFSQSSWSHFGWYMCSLSLFHYSEYLVTAVNNPKSLSLDSFLL
                                     ::::::::::::::::::::::::::::::
XP_011                               MCSLSLFHYSEYLVTAVNNPKSLSLDSFLL
                                             10        20        30

        130       140       150       160       170       180      
pF1KE1 NHSLEYTVAALSSWLEFTLENIFWPELKQITWLSVTGLLMVVFGECLRKAAMFTAGSNFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NHSLEYTVAALSSWLEFTLENIFWPELKQITWLSVTGLLMVVFGECLRKAAMFTAGSNFN
               40        50        60        70        80        90

        190       200       210       220       230       240      
pF1KE1 HVVQNEKSDTHTLVTSGVYAWFRHPSYVGWFYWSIGTQVMLCNPICGVSYALTVWRFFRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HVVQNEKSDTHTLVTSGVYAWFRHPSYVGWFYWSIGTQVMLCNPICGVSYALTVWRFFRD
              100       110       120       130       140       150

        250       260       270       280    
pF1KE1 RTEEEEISLIHFFGEEYLEYKKRVPTGLPFIKGVKVDL
       ::::::::::::::::::::::::::::::::::::::
XP_011 RTEEEEISLIHFFGEEYLEYKKRVPTGLPFIKGVKVDL
              160       170       180        




284 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:33:35 2016 done: Sun Nov  6 19:33:36 2016
 Total Scan time:  7.240 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]