NDC1 ORF clone FXC01014

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Flexi ORF Clone FXC01014

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Clone info.

Species

human

Clone Name

pF1KSDB1384 Sequence (with vector) Restriction Map

Product ID

FXC01014

HaloTag Clone PID

FHC01014

Original Clone PID

ORK01014

ORF Sequence

DNA sequence (2022 bp)
Protein sequence (674 aa)

Linker Type

Flexi_RBS type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB384396]

Gene

KIBB1384

Symbol

NDC1

Alias : NET3, TMEM48

Description

NDC1 transmembrane nucleoporin, transcript variant 1

Original Clone ID

fj12036

Features of the cloned ORF sequence

Description

Length: 2022 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 674 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS583.1 0 100.0 NDC1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR019049 19 667 PF09531 Nucleoporin protein Ndc1-Nup
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 25 IVASIVWSVLFLPICTTVFIIFS 47 PRIMARY 23 2 65 LYSSYVIFYFLLLSVVIIIISIF 87 PRIMARY 23 3 91 FYAVVPSIPCSRLALIGKIIHPQ 113 SECONDARY 23 4 115 LMHSFIHAAMGMVMAWCAAVITQ 137 PRIMARY 23 5 161 CLNEYHLFFLLTGAFMGYSYSLL 183 SECONDARY 23 6 208 SLLLLVKHSCVESLFLVRNFCIL 230 SECONDARY 23 7 265 LNLSLLYHVWLCGVFLLTTWYVS 287 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_060557 674 610115 100.0 100.0 XP_011540068 673 610115 100.0 97.2 NP_001162023 634 610115 94.1 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KSDB1384 Download

>KIBB1384  2022 bp
ATGGCCACGGCCGTGAGCCGGCCCTGCGCCGGCAGGTCGCGGGACATACTGTGGCGCGTT
TTGGGCTGGAGGATAGTTGCAAGTATTGTTTGGTCAGTGCTATTTCTACCCATCTGCACC
ACAGTATTTATAATTTTCAGCAGGATTGATTTGTTTCATCCTATACAGTGGCTGTCTGAT
TCTTTCAGTGACCTGTATAGTTCCTATGTAATCTTTTACTTCCTGCTGCTGTCAGTGGTA
ATAATAATAATAAGTATTTTCAATGTGGAGTTCTATGCAGTTGTGCCTTCTATTCCTTGC
TCCAGACTAGCTCTGATAGGGAAGATCATTCATCCTCAGCAACTCATGCACTCATTTATT
CATGCTGCAATGGGAATGGTGATGGCCTGGTGTGCTGCAGTGATAACCCAGGGCCAGTAC
AGCTTTCTTGTGGTTCCCTGCACTGGTACTAACAGCTTTGGTAGCCCTGCTGCGCAAACC
TGCTTAAATGAATATCATCTTTTTTTCCTACTGACTGGAGCATTTATGGGCTATAGCTAT
AGCCTCCTGTATTTTGTTAACAACATGAACTATCTTCCATTTCCCATCATACAGCAATAC
AAGTTCTTGCGTTTTAGGAGATCTCTGCTCTTATTAGTTAAACACAGTTGTGTGGAATCA
CTGTTCCTGGTTAGAAATTTCTGCATTTTATATTATTTTCTTGGCTATATTCCCAAAGCT
TGGATTAGCACTGCTATGAACCTTCACATAGATGAGCAGGTTCATAGGCCACTTGACACA
GTGAGTGGCCTCTTAAATCTCTCGTTACTCTACCATGTCTGGCTGTGTGGTGTCTTTCTC
CTGACGACTTGGTATGTCTCATGGATACTCTTCAAAATCTATGCCACAGAGGCTCATGTG
TTTCCTGTTCAACCACCATTTGCAGAAGGGTCAGATGAGTGCCTTCCAAAAGTGTTAAAT
AGCAATCCTCCCCCCATCATAAAGTATTTAGCCTTGCAGGACCTGATGTTGCTTTCTCAA
TATTCTCCTTCACGAAGACAAGAAGTTTTCAGCCTCAGCCAACCAGGTGGACATCCCCAC
AATTGGACAGCCATTTCAAGGGAGTGTTTGAATCTTTTAAATGGTATGACTCAGAAACTG
ATTCTCTATCAAGAAGCTGCTGCTACGAATGGGAGAGTGTCTTCATCTTACCCAGTGGAA
CCTAAGAAATTAAATTCTCCAGAAGAAACTGCTTTTCAGACACCAAAATCTAGCCAGATG
CCTCGGCCTTCAGTGCCACCATTAGTTAAAACATCACTGTTTTCTTCAAAATTATCTACA
CCTGATGTTGTGAGCCCATTTGGGACCCCATTTGGCTCTAGTGTAATGAATCGGATGGCT
GGAATTTTTGATGTAAACACCTGCTATGGGTCACCGCAAAGTCCTCAGCTAATAAGAAGG
GGGCCAAGATTGTGGACATCAGCTTCTGATCAGCAAATGACTGAATTTTCTAATCCTTCT
CCATCTACCTCTATTAGTGCTGAGGGTAAGACAATGAGACAACCCAGTGTGATTTATTCA
TGGATTCAGAATAAACGTGAACAGATTAAGAATTTCTTGTCAAAACGGGTGCTGATAATG
TATTTTTTCAGTAAGCACCCAGAGGCCTCCATTCAGGCTGTTTTTTCAGATGCCCAAATG
CATATTTGGGCATTAGAAGGTCTGTCGCACTTAGTAGCAGCATCATTTACAGAGGATAGA
TTTGGAGTTGTCCAGACGACACTACCAGCTATCCTTAATACTTTGTTGACACTGCAAGAG
GCAGTCGACAAGTACTTTAAGCTTCCTCATGCTTCCAGTAAACCACCCCGGATTTCAGGA
AGCCTTGTGGACACTTCATATAAAACATTAAGATTTGCATTCAGAGCATCACTGAAAACT
GCCATCTATCGAATAACTACTACATTTGGTGAACATCTGAATGCTGTGCAAGCATCTGCA
GAACATCAGAAAAGACTTCAACAGTTCTTGGAGTTCAAAGAA

ORF Protein

Cloned ORF protein sequence for pF1KSDB1384 Download

>KIBB1384  674 aa
MATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWLSD
SFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHSFI
HAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMGYSY
SLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKA
WISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHV
FPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPH
NWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQM
PRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRR
GPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVLIM
YFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQE
AVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASA
EHQKRLQQFLEFKE

ORF+Vector

Nucleotide Sequence (with vector) for pF1KSDB1384 Download

>pF1KSDB1384  5159 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCTTTCGAAGGAGAT
AGAACCATGGCCACGGCCGTGAGCCGGCCCTGCGCCGGCAGGTCGCGGGACATACTGTGG
CGCGTTTTGGGCTGGAGGATAGTTGCAAGTATTGTTTGGTCAGTGCTATTTCTACCCATC
TGCACCACAGTATTTATAATTTTCAGCAGGATTGATTTGTTTCATCCTATACAGTGGCTG
TCTGATTCTTTCAGTGACCTGTATAGTTCCTATGTAATCTTTTACTTCCTGCTGCTGTCA
GTGGTAATAATAATAATAAGTATTTTCAATGTGGAGTTCTATGCAGTTGTGCCTTCTATT
CCTTGCTCCAGACTAGCTCTGATAGGGAAGATCATTCATCCTCAGCAACTCATGCACTCA
TTTATTCATGCTGCAATGGGAATGGTGATGGCCTGGTGTGCTGCAGTGATAACCCAGGGC
CAGTACAGCTTTCTTGTGGTTCCCTGCACTGGTACTAACAGCTTTGGTAGCCCTGCTGCG
CAAACCTGCTTAAATGAATATCATCTTTTTTTCCTACTGACTGGAGCATTTATGGGCTAT
AGCTATAGCCTCCTGTATTTTGTTAACAACATGAACTATCTTCCATTTCCCATCATACAG
CAATACAAGTTCTTGCGTTTTAGGAGATCTCTGCTCTTATTAGTTAAACACAGTTGTGTG
GAATCACTGTTCCTGGTTAGAAATTTCTGCATTTTATATTATTTTCTTGGCTATATTCCC
AAAGCTTGGATTAGCACTGCTATGAACCTTCACATAGATGAGCAGGTTCATAGGCCACTT
GACACAGTGAGTGGCCTCTTAAATCTCTCGTTACTCTACCATGTCTGGCTGTGTGGTGTC
TTTCTCCTGACGACTTGGTATGTCTCATGGATACTCTTCAAAATCTATGCCACAGAGGCT
CATGTGTTTCCTGTTCAACCACCATTTGCAGAAGGGTCAGATGAGTGCCTTCCAAAAGTG
TTAAATAGCAATCCTCCCCCCATCATAAAGTATTTAGCCTTGCAGGACCTGATGTTGCTT
TCTCAATATTCTCCTTCACGAAGACAAGAAGTTTTCAGCCTCAGCCAACCAGGTGGACAT
CCCCACAATTGGACAGCCATTTCAAGGGAGTGTTTGAATCTTTTAAATGGTATGACTCAG
AAACTGATTCTCTATCAAGAAGCTGCTGCTACGAATGGGAGAGTGTCTTCATCTTACCCA
GTGGAACCTAAGAAATTAAATTCTCCAGAAGAAACTGCTTTTCAGACACCAAAATCTAGC
CAGATGCCTCGGCCTTCAGTGCCACCATTAGTTAAAACATCACTGTTTTCTTCAAAATTA
TCTACACCTGATGTTGTGAGCCCATTTGGGACCCCATTTGGCTCTAGTGTAATGAATCGG
ATGGCTGGAATTTTTGATGTAAACACCTGCTATGGGTCACCGCAAAGTCCTCAGCTAATA
AGAAGGGGGCCAAGATTGTGGACATCAGCTTCTGATCAGCAAATGACTGAATTTTCTAAT
CCTTCTCCATCTACCTCTATTAGTGCTGAGGGTAAGACAATGAGACAACCCAGTGTGATT
TATTCATGGATTCAGAATAAACGTGAACAGATTAAGAATTTCTTGTCAAAACGGGTGCTG
ATAATGTATTTTTTCAGTAAGCACCCAGAGGCCTCCATTCAGGCTGTTTTTTCAGATGCC
CAAATGCATATTTGGGCATTAGAAGGTCTGTCGCACTTAGTAGCAGCATCATTTACAGAG
GATAGATTTGGAGTTGTCCAGACGACACTACCAGCTATCCTTAATACTTTGTTGACACTG
CAAGAGGCAGTCGACAAGTACTTTAAGCTTCCTCATGCTTCCAGTAAACCACCCCGGATT
TCAGGAAGCCTTGTGGACACTTCATATAAAACATTAAGATTTGCATTCAGAGCATCACTG
AAAACTGCCATCTATCGAATAACTACTACATTTGGTGAACATCTGAATGCTGTGCAAGCA
TCTGCAGAACATCAGAAAAGACTTCAACAGTTCTTGGAGTTCAAAGAATACGTAGTTTAA
ACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGA
TCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATA
ACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGG
AACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAG
CCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCA
GTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCG
CTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTG
CCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTC
TTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGG
TCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAG
AGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTC
CGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTG
AATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGC
GCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTG
CCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCT
GATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCG
AAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGAT
CTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGT
ATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATG
GTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGC
TATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCT
GACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTAT
CGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGA
CGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGA
TAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGC
CGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACG
CTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGG
AAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTT
TCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGT
GTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTG
CGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACT
GGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTT
CTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCT
GCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCAC
CGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATT
TCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACG
TTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTC
CGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAAT
GGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTAT
TCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCAT
TTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGG
GATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTC
CGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATC
AGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCC
ACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTC
TCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAG
ACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATC
CGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCC
CGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTG
CGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT