DDX42 ORF clone FXC01365

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Flexi ORF Clone FXC01365

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Clone info.

Species

human

Clone Name

pF1KB4115 Sequence (with vector) Restriction Map

Product ID

FXC01365

HaloTag Clone PID

FHC01365

Original Clone PID

ORK01365

ORF Sequence

DNA sequence (2814 bp)
Protein sequence (938 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1KOF Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB384900]

Gene

KIBB4115

Symbol

DDX42

Alias : DDX42P, RHELP, RNAHP, SF3B8, SF3b125

Description

DEAD (Asp-Glu-Ala-Asp) box helicase 42, transcript variant 1

Original Clone ID

fk02388

Features of the cloned ORF sequence

Description

Length: 2814 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 938 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS32704.1 0 100.0 DDX42 CCDS34240.1 5.9e-51 40.3 DDX46 CCDS75306.1 5.9e-51 40.3 DDX46 CCDS46706.1 1.7e-46 36.2 DDX17 CCDS33646.1 3.7e-46 36.1 DDX17 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR011545 277 448 PF00270 DNA/RNA helicase IPR001650 517 593 PF00271 Helicase HMMSmart IPR014001 272 474 SM00487 DEAD-like helicase IPR001650 512 593 SM00490 Helicase ProfileScan IPR014014 253 281 PS51195 RNA helicase IPR014001 284 459 PS51192 DEAD-like helicase IPR001650 487 632 PS51194 Helicase
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_987095 938 613369 100.0 100.0 XP_016879600 938 613369 100.0 100.0 XP_006721720 938 613369 100.0 100.0 NP_031398 938 613369 100.0 100.0 XP_016879601 775 613369 100.0 82.6 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB4115 Download

>KIBB4115  2814 bp
ATGAACTGGAATAAAGGTGGTCCTGGCACTAAGCGAGGATTTGGCTTTGGAGGTTTTGCC
ATCAGTGCTGGGAAAAAGGAGGAACCCAAACTCCCACAGCAGTCCCACAGTGCCTTTGGG
GCAACCAGCTCTTCTTCTGGATTTGGAAAGTCAGCTCCACCACAGCTTCCTTCTTTCTAC
AAAATTGGATCTAAGCGGGCCAACTTTGATGAAGAAAATGCCTATTTTGAAGATGAGGAA
GAAGATTCTAGCAACGTTGATTTACCTTACATTCCTGCTGAAAACTCACCAACTCGCCAG
CAATTCCATTCCAAGCCAGTAGATTCTGACAGCGATGATGATCCCTTGGAGGCATTCATG
GCTGAAGTGGAGGATCAGGCAGCTAGAGACATGAAGAGGCTTGAAGAAAAGGACAAGGAA
AGAAAAAACGTAAAGGGTATTCGAGATGACATTGAAGAGGAAGATGACCAAGAAGCTTAT
TTTCGATACATGGCAGAAAACCCAACTGCTGGTGTGGTTCAGGAGGAAGAGGAAGACAAT
CTAGAATATGATAGTGACGGAAATCCAATTGCACCTACCAAAAAAATCATTGATCCTCTT
CCCCCCATTGATCATTCAGAGATTGACTATCCACCATTTGAAAAAAACTTTTACAATGAG
CATGAAGAGATAACCAACCTCACTCCACAGCAGTTAATAGATCTCCGGCATAAGCTCAAT
CTTCGGGTCTCTGGTGCTGCACCTCCTAGACCAGGAAGTAGCTTTGCTCATTTTGGGTTT
GACGAACAACTTATGCACCAGATTCGGAAATCTGAATACACACAGCCCACTCCAATACAG
TGCCAGGGTGTGCCTGTGGCATTAAGTGGTAGAGACATGATTGGTATTGCCAAAACAGGT
AGTGGGAAAACTGCAGCCTTCATTTGGCCCATGTTGATTCATATAATGGACCAGAAGGAG
TTGGAACCAGGTGATGGACCAATTGCAGTGATTGTGTGTCCTACCAGGGAGCTTTGCCAG
CAGATCCATGCAGAATGTAAGCGGTTTGGAAAAGCATATAATCTTCGATCAGTGGCCGTA
TATGGAGGAGGGAGTATGTGGGAGCAGGCCAAGGCCCTTCAGGAGGGGGCAGAGATTGTT
GTGTGTACCCCAGGTCGACTGATAGATCATGTGAAAAAGAAAGCTACCAATCTTCAAAGA
GTCTCTTACCTTGTGTTTGATGAAGCAGATCGAATGTTTGACATGGGATTTGAGTACCAA
GTTCGATCCATAGCAAGTCATGTTCGTCCTGACAGGCAGACTCTCTTATTTAGTGCAACT
TTTCGGAAGAAGATTGAAAAGTTGGCCAGAGACATCCTGATCGACCCTATTCGAGTGGTG
CAGGGAGATATTGGAGAGGCAAATGAAGATGTGACACAGATTGTGGAGATTCTCCATTCT
GGACCTAGTAAATGGAACTGGCTTACCCGGCGTCTGGTAGAATTTACCTCTTCAGGGAGT
GTCCTCCTCTTTGTTACTAAAAAAGCCAATGCTGAAGAGCTAGCGAATAACCTTAAACAG
GAGGGTCATAATCTTGGGCTGCTCCATGGGGATATGGATCAGAGTGAGAGAAACAAGGTC
ATTTCAGACTTTAAGAAAAAGGACATCCCAGTCCTGGTGGCCACAGATGTTGCAGCCCGT
GGTCTGGACATTCCTTCAATTAAGACTGTCATTAACTATGATGTGGCACGAGACATTGAT
ACCCACACGCATAGGATTGGCCGCACAGGAAGAGCGGGTGAGAAAGGTGTGGCCTATACC
CTACTCACTCCCAAGGACAGCAATTTTGCTGGTGACCTGGTCCGGAACTTGGAAGGAGCC
AATCAACACGTTTCTAAGGAACTCCTAGATCTGGCAATGCAGAATGCCTGGTTTCGGAAA
TCTCGATTCAAAGGAGGGAAAGGAAAAAAGCTGAACATTGGTGGAGGAGGCCTAGGCTAC
AGGGAGCGGCCTGGCCTGGGCTCTGAGAACATGGATCGAGGAAATAACAATGTAATGAGC
AATTATGAGGCCTACAAGCCTTCCACAGGAGCTATGGGAGATCGACTAACGGCAATGAAA
GCAGCTTTCCAGTCACAGTACAAGAGTCACTTTGTTGCAGCCAGTTTAAGTAATCAGAAG
GCTGGAAGTTCTGCTGCTGGGGCAAGTGGGTGGACTAGTGCAGGGAGCTTGAATTCTGTT
CCAACTAACTCAGCACAACAGGGCCATAACAGTCCTGACAGCCCCGTCACCAGTGCCGCC
AAGGGCATCCCAGGCTTTGGCAATACTGGCAACATCAGTGGTGCCCCTGTGACCTACCCG
TCTGCCGGAGCCCAAGGAGTCAACAACACAGCTTCAGGGAATAACAGCCGAGAAGGGACT
GGGGGCAGCAACGGGAAAAGAGAGAGATATACTGAGAACCGGGGCAGCAGCCGTCACAGT
CACGGAGAGACTGGCAATCGGCATAGCGATAGTCCACGTCACGGAGATGGTGGTCGCCAT
GGAGATGGATACCGCCATCCAGAAAGCAGCAGCCGTCATACTGATGGCCATCGGCACGGG
GAGAACAGACATGGAGGAAGCGCAGGCCGGCATGGGGAGAACCGGGGTGCAAATGATGGT
CGGAATGGGGAAAGCAGGAAAGAAGCTTTTAATCGTGAGAGCAAGATGGAGCCCAAGATG
GAACCCAAAGTGGACAGCAGCAAGATGGACAAGGTGGACAGCAAGACAGATAAGACAGCT
GACGGCTTTGCTGTCCCAGAGCCGCCTAAACGCAAGAAAAGTCGATGGGACAGT

ORF Protein

Cloned ORF protein sequence for pF1KB4115 Download

>KIBB4115  938 aa
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENMDRGNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQK
AGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPVTSAAKGIPGFGNTGNISGAPVTYP
SAGAQGVNNTASGNNSREGTGGSNGKRERYTENRGSSRHSHGETGNRHSDSPRHGDGGRH
GDGYRHPESSSRHTDGHRHGENRHGGSAGRHGENRGANDGRNGESRKEAFNRESKMEPKM
EPKVDSSKMDKVDSKTDKTADGFAVPEPPKRKKSRWDS

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB4115 Download

>pF1KB4115  5927 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAACTGGAAT
AAAGGTGGTCCTGGCACTAAGCGAGGATTTGGCTTTGGAGGTTTTGCCATCAGTGCTGGG
AAAAAGGAGGAACCCAAACTCCCACAGCAGTCCCACAGTGCCTTTGGGGCAACCAGCTCT
TCTTCTGGATTTGGAAAGTCAGCTCCACCACAGCTTCCTTCTTTCTACAAAATTGGATCT
AAGCGGGCCAACTTTGATGAAGAAAATGCCTATTTTGAAGATGAGGAAGAAGATTCTAGC
AACGTTGATTTACCTTACATTCCTGCTGAAAACTCACCAACTCGCCAGCAATTCCATTCC
AAGCCAGTAGATTCTGACAGCGATGATGATCCCTTGGAGGCATTCATGGCTGAAGTGGAG
GATCAGGCAGCTAGAGACATGAAGAGGCTTGAAGAAAAGGACAAGGAAAGAAAAAACGTA
AAGGGTATTCGAGATGACATTGAAGAGGAAGATGACCAAGAAGCTTATTTTCGATACATG
GCAGAAAACCCAACTGCTGGTGTGGTTCAGGAGGAAGAGGAAGACAATCTAGAATATGAT
AGTGACGGAAATCCAATTGCACCTACCAAAAAAATCATTGATCCTCTTCCCCCCATTGAT
CATTCAGAGATTGACTATCCACCATTTGAAAAAAACTTTTACAATGAGCATGAAGAGATA
ACCAACCTCACTCCACAGCAGTTAATAGATCTCCGGCATAAGCTCAATCTTCGGGTCTCT
GGTGCTGCACCTCCTAGACCAGGAAGTAGCTTTGCTCATTTTGGGTTTGACGAACAACTT
ATGCACCAGATTCGGAAATCTGAATACACACAGCCCACTCCAATACAGTGCCAGGGTGTG
CCTGTGGCATTAAGTGGTAGAGACATGATTGGTATTGCCAAAACAGGTAGTGGGAAAACT
GCAGCCTTCATTTGGCCCATGTTGATTCATATAATGGACCAGAAGGAGTTGGAACCAGGT
GATGGACCAATTGCAGTGATTGTGTGTCCTACCAGGGAGCTTTGCCAGCAGATCCATGCA
GAATGTAAGCGGTTTGGAAAAGCATATAATCTTCGATCAGTGGCCGTATATGGAGGAGGG
AGTATGTGGGAGCAGGCCAAGGCCCTTCAGGAGGGGGCAGAGATTGTTGTGTGTACCCCA
GGTCGACTGATAGATCATGTGAAAAAGAAAGCTACCAATCTTCAAAGAGTCTCTTACCTT
GTGTTTGATGAAGCAGATCGAATGTTTGACATGGGATTTGAGTACCAAGTTCGATCCATA
GCAAGTCATGTTCGTCCTGACAGGCAGACTCTCTTATTTAGTGCAACTTTTCGGAAGAAG
ATTGAAAAGTTGGCCAGAGACATCCTGATCGACCCTATTCGAGTGGTGCAGGGAGATATT
GGAGAGGCAAATGAAGATGTGACACAGATTGTGGAGATTCTCCATTCTGGACCTAGTAAA
TGGAACTGGCTTACCCGGCGTCTGGTAGAATTTACCTCTTCAGGGAGTGTCCTCCTCTTT
GTTACTAAAAAAGCCAATGCTGAAGAGCTAGCGAATAACCTTAAACAGGAGGGTCATAAT
CTTGGGCTGCTCCATGGGGATATGGATCAGAGTGAGAGAAACAAGGTCATTTCAGACTTT
AAGAAAAAGGACATCCCAGTCCTGGTGGCCACAGATGTTGCAGCCCGTGGTCTGGACATT
CCTTCAATTAAGACTGTCATTAACTATGATGTGGCACGAGACATTGATACCCACACGCAT
AGGATTGGCCGCACAGGAAGAGCGGGTGAGAAAGGTGTGGCCTATACCCTACTCACTCCC
AAGGACAGCAATTTTGCTGGTGACCTGGTCCGGAACTTGGAAGGAGCCAATCAACACGTT
TCTAAGGAACTCCTAGATCTGGCAATGCAGAATGCCTGGTTTCGGAAATCTCGATTCAAA
GGAGGGAAAGGAAAAAAGCTGAACATTGGTGGAGGAGGCCTAGGCTACAGGGAGCGGCCT
GGCCTGGGCTCTGAGAACATGGATCGAGGAAATAACAATGTAATGAGCAATTATGAGGCC
TACAAGCCTTCCACAGGAGCTATGGGAGATCGACTAACGGCAATGAAAGCAGCTTTCCAG
TCACAGTACAAGAGTCACTTTGTTGCAGCCAGTTTAAGTAATCAGAAGGCTGGAAGTTCT
GCTGCTGGGGCAAGTGGGTGGACTAGTGCAGGGAGCTTGAATTCTGTTCCAACTAACTCA
GCACAACAGGGCCATAACAGTCCTGACAGCCCCGTCACCAGTGCCGCCAAGGGCATCCCA
GGCTTTGGCAATACTGGCAACATCAGTGGTGCCCCTGTGACCTACCCGTCTGCCGGAGCC
CAAGGAGTCAACAACACAGCTTCAGGGAATAACAGCCGAGAAGGGACTGGGGGCAGCAAC
GGGAAAAGAGAGAGATATACTGAGAACCGGGGCAGCAGCCGTCACAGTCACGGAGAGACT
GGCAATCGGCATAGCGATAGTCCACGTCACGGAGATGGTGGTCGCCATGGAGATGGATAC
CGCCATCCAGAAAGCAGCAGCCGTCATACTGATGGCCATCGGCACGGGGAGAACAGACAT
GGAGGAAGCGCAGGCCGGCATGGGGAGAACCGGGGTGCAAATGATGGTCGGAATGGGGAA
AGCAGGAAAGAAGCTTTTAATCGTGAGAGCAAGATGGAGCCCAAGATGGAACCCAAAGTG
GACAGCAGCAAGATGGACAAGGTGGACAGCAAGACAGATAAGACAGCTGACGGCTTTGCT
GTCCCAGAGCCGCCTAAACGCAAGAAAAGTCGATGGGACAGTGTTTAAACGAATTCGAGC
TCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAA
CAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACC
CCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGG
TTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGC
TACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATT
CATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCA
GCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCG
CCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGG
ATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATG
CTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGC
TATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCG
CAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAG
GACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTC
GACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGAT
CTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGG
CGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATC
GAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAG
CATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGT
GAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGC
CGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATA
GCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTC
GTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGAC
GAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGA
CTATAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACG
TGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAAA
TCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGT
GGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAG
AGCGCAGATACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAA
CTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAG
TGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCA
GCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACAC
CGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAA
GGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCC
AGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCG
TCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGC
CTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATC
CCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGGAAATACAGG
AACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGT
GGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAA
AATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCT
GCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAA
TCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGC
GTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAG
CGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCAT
GCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAG
AGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTC
GTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGG
ATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTG
CCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAA
CTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT