TRIM13 ORF clone FXC11734

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Flexi ORF Clone FXC11734

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Clone info.

Species

human

Clone Name

pF1KB9643 Sequence (with vector) Restriction Map

Product ID

FXC11734

HaloTag Clone PID

FHC11734

ORF Sequence

DNA sequence (1221 bp)
Protein sequence (407 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB529314]

Gene

KIBB9643

Symbol

TRIM13

Alias : CAR, DLEU5, LEU5, RFP2, RNF77

Description

tripartite motif containing 13, transcript variant 1

Original Clone ID

cp00226

Features of the cloned ORF sequence

Description

Length: 1221 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 407 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS9423.1 1.8e-125 100.0 TRIM13 CCDS41888.1 1.8e-125 100.0 TRIM13 CCDS3190.1 6.2e-29 34.3 TRIM59 CCDS31356.1 2.1e-11 26.5 TRIM68 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR018957 10 57 PF00097 Zinc finger IPR000315 90 131 PF00643 Zinc finger HMMSmart IPR001841 10 57 SM00184 Zinc finger IPR000315 89 131 SM00336 Zinc finger ProfileScan IPR001841 10 58 PS50089 Zinc finger IPR000315 89 131 PS50119 Zinc finger
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 310 IPWSFYKLFLLILLLGLVIVFGP 332 PRIMARY 23 2 377 DGFFIFNERFKNFTLVVLNNVAE 399 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_998755 407 605661 100.0 100.0 NP_434698 407 605661 100.0 100.0 NP_005789 407 605661 100.0 100.0 NP_001007279 410 605661 100.0 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB9643 Download

>KIBB9643  1221 bp
ATGGAGCTGCTTGAAGAAGATCTCACATGCCCTATTTGTTGTAGTCTGTTTGATGATCCA
CGGGTTTTGCCTTGCTCCCACAACTTCTGCAAAAAATGCTTAGAAGGTATCTTAGAAGGG
AGTGTGCGGAATTCCTTGTGGAGACCAGCTCCATTCAAGTGTCCTACATGCCGTAAGGAA
ACTTCAGCTACTGGAATTAATAGCCTGCAGGTTAATTACTCCCTGAAGGGTATTGTGGAA
AAGTATAACAAGATCAAGATCTCTCCCAAAATGCCAGTATGCAAAGGACACTTGGGGCAG
CCTCTCAACATTTTCTGCCTGACTGATATGCAGCTGATTTGTGGGATCTGTGCTACTCGT
GGGGAGCACACCAAACATGTCTTCTGTTCTATTGAAGATGCCTATGCTCAGGAAAGGGAT
GCCTTTGAGTCCCTCTTCCAGAGCTTTGAGACCTGGCGTCGGGGAGATGCTCTTTCTCGC
TTGGATACCTTGGAAACTAGTAAGAGGAAATCCCTACAGTTACTGACTAAAGATTCAGAT
AAAGTGAAGGAATTTTTTGAGAAGTTACAACACACACTGGATCAAAAGAAGAATGAAATT
CTGTCTGACTTTGAGACCATGAAACTTGCTGTTATGCAAGCATATGACCCAGAGATCAAC
AAACTCAACACCATCTTGCAGGAGCAACGGATGGCCTTTAACATTGCTGAGGCTTTCAAA
GATGTGTCAGAACCCATTGTATTTCTGCAACAGATGCAGGAGTTTAGAGAGAAAATCAAA
GTAATCAAGGAAACTCCTTTACCTCCCTCTAATTTGCCTGCAAGCCCTTTAATGAAGAAC
TTTGATACCAGTCAGTGGGAAGACATAAAACTAGTCGATGTGGATAAACTTTCTTTGCCT
CAAGACACTGGCACATTCATTAGCAAGATTCCCTGGAGCTTTTATAAGTTATTTTTGCTA
ATCCTTCTGCTTGGCCTTGTCATTGTCTTTGGTCCTACCATGTTCCTAGAATGGTCATTA
TTTGATGACCTGGCAACTTGGAAAGGCTGTCTTTCAAACTTCAGTTCCTATCTGACTAAA
ACAGCCGATTTCATAGAACAATCAGTTTTTTACTGGGAACAGGTGACAGATGGGTTTTTC
ATTTTCAATGAAAGATTCAAGAATTTTACTTTGGTGGTACTGAACAATGTGGCAGAATTT
GTGTGCAAATATAAACTATTA

ORF Protein

Cloned ORF protein sequence for pF1KB9643 Download

>KIBB9643  407 aa
MELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKE
TSATGINSLQVNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCLTDMQLICGICATR
GEHTKHVFCSIEDAYAQERDAFESLFQSFETWRRGDALSRLDTLETSKRKSLQLLTKDSD
KVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQEQRMAFNIAEAFK
DVSEPIVFLQQMQEFREKIKVIKETPLPPSNLPASPLMKNFDTSQWEDIKLVDVDKLSLP
QDTGTFISKIPWSFYKLFLLILLLGLVIVFGPTMFLEWSLFDDLATWKGCLSNFSSYLTK
TADFIEQSVFYWEQVTDGFFIFNERFKNFTLVVLNNVAEFVCKYKLL

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB9643 Download

>pF1KB9643  4334 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGAGCTGCTT
GAAGAAGATCTCACATGCCCTATTTGTTGTAGTCTGTTTGATGATCCACGGGTTTTGCCT
TGCTCCCACAACTTCTGCAAAAAATGCTTAGAAGGTATCTTAGAAGGGAGTGTGCGGAAT
TCCTTGTGGAGACCAGCTCCATTCAAGTGTCCTACATGCCGTAAGGAAACTTCAGCTACT
GGAATTAATAGCCTGCAGGTTAATTACTCCCTGAAGGGTATTGTGGAAAAGTATAACAAG
ATCAAGATCTCTCCCAAAATGCCAGTATGCAAAGGACACTTGGGGCAGCCTCTCAACATT
TTCTGCCTGACTGATATGCAGCTGATTTGTGGGATCTGTGCTACTCGTGGGGAGCACACC
AAACATGTCTTCTGTTCTATTGAAGATGCCTATGCTCAGGAAAGGGATGCCTTTGAGTCC
CTCTTCCAGAGCTTTGAGACCTGGCGTCGGGGAGATGCTCTTTCTCGCTTGGATACCTTG
GAAACTAGTAAGAGGAAATCCCTACAGTTACTGACTAAAGATTCAGATAAAGTGAAGGAA
TTTTTTGAGAAGTTACAACACACACTGGATCAAAAGAAGAATGAAATTCTGTCTGACTTT
GAGACCATGAAACTTGCTGTTATGCAAGCATATGACCCAGAGATCAACAAACTCAACACC
ATCTTGCAGGAGCAACGGATGGCCTTTAACATTGCTGAGGCTTTCAAAGATGTGTCAGAA
CCCATTGTATTTCTGCAACAGATGCAGGAGTTTAGAGAGAAAATCAAAGTAATCAAGGAA
ACTCCTTTACCTCCCTCTAATTTGCCTGCAAGCCCTTTAATGAAGAACTTTGATACCAGT
CAGTGGGAAGACATAAAACTAGTCGATGTGGATAAACTTTCTTTGCCTCAAGACACTGGC
ACATTCATTAGCAAGATTCCCTGGAGCTTTTATAAGTTATTTTTGCTAATCCTTCTGCTT
GGCCTTGTCATTGTCTTTGGTCCTACCATGTTCCTAGAATGGTCATTATTTGATGACCTG
GCAACTTGGAAAGGCTGTCTTTCAAACTTCAGTTCCTATCTGACTAAAACAGCCGATTTC
ATAGAACAATCAGTTTTTTACTGGGAACAGGTGACAGATGGGTTTTTCATTTTCAATGAA
AGATTCAAGAATTTTACTTTGGTGGTACTGAACAATGTGGCAGAATTTGTGTGCAAATAT
AAACTATTAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGC
AGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGC
CACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTT
TTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAG
CTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCT
TGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGC
TTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGA
GCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTA
AACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAA
GAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCG
GCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCT
GATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGAC
CTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACG
ACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTG
CTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAA
GTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCA
TTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTT
GTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCC
AGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGC
TTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTG
GGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTT
GGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAG
CGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAA
TGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATC
CACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAG
GAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCA
TCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCA
GGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGG
ATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAG
GTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGT
TCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACA
CGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGG
CGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATT
TGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATC
CGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCG
CAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTG
GAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTA
GATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGT
GAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTC
TGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGG
GTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGG
TGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGA
TAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCT
GATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAG
TAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGA
TGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAA
AGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC
TGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGT
GGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGA
CGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAAT
ATGTATCCGCTCAT