PCDHB12 ORF clone pF1KB3206

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Flexi ORF Clone pF1KB3206

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Clone info.

Species

human

Clone Name

pF1KB3206 Sequence (with vector) Restriction Map

Product ID

FXC01724

HaloTag Clone PID

Original Clone PID

ORK01724

ORF Sequence

DNA sequence (2385 bp)
Protein sequence (795 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1KOF Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB384757]

Gene

KIBB3206

Symbol

PCDHB12

Alias : PCDH-BETA12

Description

protocadherin beta 12

Original Clone ID

fh04242

Features of the cloned ORF sequence

Description

Length: 2385 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 795 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS4254.1 0 100.0 PCDHB12 CCDS4253.1 0 88.8 PCDHB11 CCDS4256.1 0 76.0 PCDHB14 CCDS4249.1 0 75.0 PCDHB7 CCDS4245.1 0 74.7 PCDHB3 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR002126 73 92 PR00205 Cadherin IPR002126 242 271 PR00205 Cadherin IPR002126 314 326 PR00205 Cadherin IPR002126 326 345 PR00205 Cadherin IPR002126 449 462 PR00205 Cadherin IPR002126 509 535 PR00205 Cadherin IPR002126 543 560 PR00205 Cadherin HMMPfam IPR013164 31 112 PF08266 Cadherin IPR002126 141 232 PF00028 Cadherin IPR002126 247 337 PF00028 Cadherin IPR002126 356 441 PF00028 Cadherin IPR002126 458 552 PF00028 Cadherin IPR002126 581 661 PF00028 Cadherin HMMSmart IPR002126 54 131 SM00112 Cadherin IPR002126 155 240 SM00112 Cadherin IPR002126 264 345 SM00112 Cadherin IPR002126 368 449 SM00112 Cadherin IPR002126 473 559 SM00112 Cadherin IPR002126 589 670 SM00112 Cadherin ProfileScan IPR002126 75 133 PS50268 Cadherin IPR002126 134 242 PS50268 Cadherin IPR002126 243 347 PS50268 Cadherin IPR002126 348 451 PS50268 Cadherin IPR002126 452 561 PS50268 Cadherin IPR002126 580 671 PS50268 Cadherin
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 689 YLVVALASVSSLFLFSVLLFVAV 711 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_061755 795 606338 100.0 100.0 NP_061754 797 606337 88.8 100.0 NP_061757 798 606340 76.0 100.0 NP_061763 793 606333 75.0 100.0 NP_061760 796 606329 74.7 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB3206 Download

>KIBB3206  2385 bp
ATGGAAAACGGAGGGGCAGGCACTCTGCAGATAAGGCAAGTCCTGCTTTTCTTTGTTTTG
CTGGGAATGTCTCAGGCGGGCTCTGAAACTGGGAACTTTTTGGTGATGGAGGAATTGCAG
AGCGGGAGCTTTGTAGGAAATTTGGCAAAGACCCTGGGACTCGAGGTGAGTGAGCTGTCT
TCGCGGGGGGCTCGGGTGGTTTCTAATGATAACAAAGAGTGTTTGCAGCTGGACACAAAC
ACTGGGGATTTGCTCCTGAGAGAAATGCTAGACAGGGAGGAGCTCTGTGGCTCCAATGAG
CCTTGTGTGCTGTATTTCCAAGTGTTAATGAAAAACCCCACGCAGTTTTTACAAATTGAG
CTCCAGGTCAGGGATATAAATGATCACTCTCCCGTCTTCTTGGAAAAAGAAATGCTCTTA
GAAATCCCAGAGAACAGTCCTGTTGGTGCTGTGTTCTTGCTTGAAAGTGCAAAGGATTTA
GATGTAGGAATCAATGCTGTAAAAAGCTACACAATAAATCCGAACTCTCATTTCCACGTT
AAAATAAGAGTCAATCCAGACAATAGGAAATACCCTGAGTTAGTTCTGGACAAGGCGCTG
GATTATGAAGAGCGCCCGGAGCTCAGTTTCATCCTCACTGCTCTGGATGGCGGGTCCCCT
CCCAGGTCTGGAACTGCCTTGGTCAGGGTGGTGGTTGTAGATATTAATGACAACTCCCCT
GAGTTTGAGCAGGCTTTTTATGAGGTGAAGATTCTGGAGAATAGCATCCTTGGCTCCCTG
GTTGTGACCGTCTCAGCCTGGGATTTAGACTCTGGAACAAACAGTGAACTATCCTATACC
TTTTCCCATGCCTCAGAAGATATTCGCAAGACATTTGAAATTAATCAAAAGTCTGGTGAC
ATTACTTTAACAGCACCTTTGGATTTTGAAGCAATTGAGTCATACTCAATAATCATTCAA
GCCACAGATGGGGGAGGACTTTTTGGAAAATCTACAGTCAGAATTCAGGTGATGGATGTA
AACGACAACGCTCCTGAAATCACTGTGTCATCAATTACCAGTCCAATCCCAGAAAACACT
CCAGAGACTGTGGTTATGGTTTTCAGGATACGAGACAGAGACTCTGGGGACAACGGAAAG
ATGGTTTGTTCTATCCCGGAGGACATCCCATTCGTGCTAAAATCTTCGGTAAATAATTAC
TACACTTTGGAAACAGAGAGACCGCTGGACAGAGAGAGCAGAGCCGAGTACAACATCACC
ATCACCGTCACCGACTTGGGGACCCCCAGGCTAAAAACCGAGCACAACATAACCGTGCTG
GTCTCCGACGTCAATGACAACGCCCCCGCCTTCACCCAAACTTCCTACGCCCTGTTCGTC
CGCGAGAACAACAGCCCCGCCCTGCACATCGGCAGCATCAGCGCCACAGACAGAGACTCG
GGCACCAACGCCCAGGTCAACTACTCGCTGCTGCCGTCCCAGGACCCGCACCTGCCCCTC
GCCTCCCTGGTCTCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCGCTGGAC
TACGAGGCCCTGCAGGGGTTCCAGTTCCGCGTGGGCGCCACAGACCACGGCTCCCCGGCT
TTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTC
GTGCTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCTGGGCGGCC
GAGCCGGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGTGACTCGGGCCAGAACGCC
TGGCTGTCGTACCAGCTGCTCAAGGCCACGGAGCCCGGGCTATTCGGCGTGTGGGCGCAC
AATGGCGAGGTGCGCACCGCCAGGCTGCTGAGCGAGCGCGACGCGGCCAAGCACAGGCTG
GTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCACGTG
CTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCTCTCCCGGAGGCGGCCCCGGCCCAG
GCCCAGGCCGACTCGCTCACTGTCTACCTGGTGGTGGCGTTGGCCTCAGTGTCGTCGCTC
TTCCTCTTCTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCC
CCGGTCGGTCGCTGCTCGGTGCCTGAGGGCCCCTTTCCAGGACATCTGGTGGACGTGAGT
GGCACCGGGACCCTGTCCCAGAGCTACCACTATGAGGTGTGTGTGACTGGAGGCTCCAGG
TCAAATAAGTTCAAATTTCTGAAACCAATTATCCCCAACTTCCTACCCCAGAGCACAGGT
AGTGAAGTCGAAGAAAATCCCCCATTTCAGAATAATTTGGGTTTC

ORF Protein

Cloned ORF protein sequence for pF1KB3206 Download

>KIBB3206  795 aa
MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELS
SRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIE
LQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHV
KIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSP
EFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGD
ITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT
PETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT
ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDS
GTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPA
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNA
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG
SEVEENPPFQNNLGF

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB3206 Download

>pF1KB3206  5498 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGAAAACGGA
GGGGCAGGCACTCTGCAGATAAGGCAAGTCCTGCTTTTCTTTGTTTTGCTGGGAATGTCT
CAGGCGGGCTCTGAAACTGGGAACTTTTTGGTGATGGAGGAATTGCAGAGCGGGAGCTTT
GTAGGAAATTTGGCAAAGACCCTGGGACTCGAGGTGAGTGAGCTGTCTTCGCGGGGGGCT
CGGGTGGTTTCTAATGATAACAAAGAGTGTTTGCAGCTGGACACAAACACTGGGGATTTG
CTCCTGAGAGAAATGCTAGACAGGGAGGAGCTCTGTGGCTCCAATGAGCCTTGTGTGCTG
TATTTCCAAGTGTTAATGAAAAACCCCACGCAGTTTTTACAAATTGAGCTCCAGGTCAGG
GATATAAATGATCACTCTCCCGTCTTCTTGGAAAAAGAAATGCTCTTAGAAATCCCAGAG
AACAGTCCTGTTGGTGCTGTGTTCTTGCTTGAAAGTGCAAAGGATTTAGATGTAGGAATC
AATGCTGTAAAAAGCTACACAATAAATCCGAACTCTCATTTCCACGTTAAAATAAGAGTC
AATCCAGACAATAGGAAATACCCTGAGTTAGTTCTGGACAAGGCGCTGGATTATGAAGAG
CGCCCGGAGCTCAGTTTCATCCTCACTGCTCTGGATGGCGGGTCCCCTCCCAGGTCTGGA
ACTGCCTTGGTCAGGGTGGTGGTTGTAGATATTAATGACAACTCCCCTGAGTTTGAGCAG
GCTTTTTATGAGGTGAAGATTCTGGAGAATAGCATCCTTGGCTCCCTGGTTGTGACCGTC
TCAGCCTGGGATTTAGACTCTGGAACAAACAGTGAACTATCCTATACCTTTTCCCATGCC
TCAGAAGATATTCGCAAGACATTTGAAATTAATCAAAAGTCTGGTGACATTACTTTAACA
GCACCTTTGGATTTTGAAGCAATTGAGTCATACTCAATAATCATTCAAGCCACAGATGGG
GGAGGACTTTTTGGAAAATCTACAGTCAGAATTCAGGTGATGGATGTAAACGACAACGCT
CCTGAAATCACTGTGTCATCAATTACCAGTCCAATCCCAGAAAACACTCCAGAGACTGTG
GTTATGGTTTTCAGGATACGAGACAGAGACTCTGGGGACAACGGAAAGATGGTTTGTTCT
ATCCCGGAGGACATCCCATTCGTGCTAAAATCTTCGGTAAATAATTACTACACTTTGGAA
ACAGAGAGACCGCTGGACAGAGAGAGCAGAGCCGAGTACAACATCACCATCACCGTCACC
GACTTGGGGACCCCCAGGCTAAAAACCGAGCACAACATAACCGTGCTGGTCTCCGACGTC
AATGACAACGCCCCCGCCTTCACCCAAACTTCCTACGCCCTGTTCGTCCGCGAGAACAAC
AGCCCCGCCCTGCACATCGGCAGCATCAGCGCCACAGACAGAGACTCGGGCACCAACGCC
CAGGTCAACTACTCGCTGCTGCCGTCCCAGGACCCGCACCTGCCCCTCGCCTCCCTGGTC
TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCGCTGGACTACGAGGCCCTG
CAGGGGTTCCAGTTCCGCGTGGGCGCCACAGACCACGGCTCCCCGGCTTTGAGCAGCGAG
GCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTCGTGCTGTACCCG
CTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCTGGGCGGCCGAGCCGGGCTAC
CTGGTGACCAAGGTGGTGGCGGTGGACGGTGACTCGGGCCAGAACGCCTGGCTGTCGTAC
CAGCTGCTCAAGGCCACGGAGCCCGGGCTATTCGGCGTGTGGGCGCACAATGGCGAGGTG
CGCACCGCCAGGCTGCTGAGCGAGCGCGACGCGGCCAAGCACAGGCTGGTGGTGCTGGTC
AAGGACAATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCACGTGCTCCTGGTGGAC
GGCTTCTCCCAGCCCTACCTGCCTCTCCCGGAGGCGGCCCCGGCCCAGGCCCAGGCCGAC
TCGCTCACTGTCTACCTGGTGGTGGCGTTGGCCTCAGTGTCGTCGCTCTTCCTCTTCTCG
GTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCCCGGTCGGTCGC
TGCTCGGTGCCTGAGGGCCCCTTTCCAGGACATCTGGTGGACGTGAGTGGCACCGGGACC
CTGTCCCAGAGCTACCACTATGAGGTGTGTGTGACTGGAGGCTCCAGGTCAAATAAGTTC
AAATTTCTGAAACCAATTATCCCCAACTTCCTACCCCAGAGCACAGGTAGTGAAGTCGAA
GAAAATCCCCCATTTCAGAATAATTTGGGTTTCGTTTAAACGAATTCGAGCTCGGTACCC
GGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCG
AAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGC
CTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGC
TGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTT
TCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGG
TCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCG
CCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGT
AAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGG
CGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAA
GATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGG
GCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGC
CCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCA
GCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTC
ACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCA
TCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCAT
ACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCA
CGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGG
CTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTC
GTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCT
GGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCT
ACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTAC
GGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTC
TGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGACTATAAAAG
GATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTC
GTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAAATCCTTTTTT
TCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTT
GCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGAT
ACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGC
ACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAA
GTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGG
CTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAG
ATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAG
GTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAA
CGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTT
GTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACG
GTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTC
TGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGGAAATACAGGAACGCACGC
TGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGT
GGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCA
GGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTG
ATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTAC
TGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGT
AGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT
AAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTC
AGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAA
CTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCT
GTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACG
TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATC
AAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGT
TTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT