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SpecieshumanProduct IDFXC04833Cloning SiteSgfI-PmeIGeneKIBB7342SymbolDSC1
Alias : CDHF1, DG2/DG3Descriptiondesmocollin 1, transcript variant Dsc1aOriginal Clone IDoc00556
Length: 2682 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 894 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS11894.1 0 100.0 DSC1 CCDS11895.1 0 99.9 DSC1 CCDS11892.1 5.3e-200 54.7 DSC2 CCDS32810.1 2.3e-189 51.3 DSC3 CCDS11893.1 6.6e-176 52.9 DSC2
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002126 183 202 PR00205 Cadherin IPR002126 242 271 PR00205 Cadherin IPR002126 317 329 PR00205 Cadherin IPR002126 333 352 PR00205 Cadherin IPR002126 352 365 PR00205 Cadherin IPR002126 412 438 PR00205 Cadherin IPR009124 503 522 PR01820 Desmocollin IPR009122 555 569 PR01818 Desmosomal cadherin IPR002126 559 576 PR00205 Cadherin IPR009124 658 676 PR01820 Desmocollin IPR009124 722 744 PR01820 Desmocollin IPR009124 816 830 PR01820 Desmocollin IPR009122 856 868 PR01818 Desmosomal cadherin IPR009122 869 881 PR01818 Desmosomal cadherin IPR009122 882 893 PR01818 Desmosomal cadherin HMMPfam IPR014868 31 110 PF08758 Cadherin prodomain-like IPR002126 141 232 PF00028 Cadherin IPR002126 249 344 PF00028 Cadherin IPR002126 359 462 PF00028 Cadherin IPR002126 481 567 PF00028 Cadherin IPR000233 809 893 PF01049 Cadherin HMMSmart IPR002126 155 240 SM00112 Cadherin IPR002126 264 352 SM00112 Cadherin IPR002126 375 470 SM00112 Cadherin IPR002126 493 575 SM00112 Cadherin IPR002126 593 672 SM00112 Cadherin ProfileScan IPR002126 135 242 PS50268 Cadherin IPR002126 243 354 PS50268 Cadherin IPR002126 355 476 PS50268 Cadherin IPR002126 472 577 PS50268 Cadherin IPR002126 575 672 PS50268 Cadherin
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 6 AAPGSIFCKQLLFSLLVLTLLCD 28 PRIMARY 23 2 690 GRWAILAMVLGSVLLLCILFTCF 712 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_077739 894 125643 100.0 100.0 NP_004939 840 125643 99.9 92.8 NP_077740 901 125645,610476 54.7 99.9 NP_001932 896 600271 51.3 99.8 NP_004940 847 125645,610476 52.9 92.7 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB7342 Download>KIBB7342 2682 bp ATGGCTCTGGCCTCTGCTGCCCCAGGGAGCATCTTCTGTAAGCAGCTCCTTTTCTCTCTC CTGGTTTTAACATTACTTTGCGATGCTTGTCAGAAAGTTTATCTTCGAGTTCCTTCTCAT CTTCAGGCTGAAACACTTGTAGGCAAAGTGAATCTGGAGGAGTGTCTCAAGTCGGCCAGC CTAATCCGGTCCAGTGACCCTGCCTTCAGAATTCTAGAAGATGGCTCAATTTACACAACA CATGACCTCATTTTGTCTTCTGAAAGGAAAAGTTTTTCCATTTTCCTTTCAGATGGTCAG AGACGGGAACAACAAGAGATAAAAGTTGTACTGTCAGCAAGAGAAAACAAGTCTCCTAAG AAGAGACATACCAAAGACACAGCCCTCAAGCGCAGCAAGAGACGATGGGCTCCTATTCCA GCTTCATTGATGGAGAACTCGTTGGGTCCATTTCCACAACACGTTCAGCAGATCCAATCT GATGCTGCACAGAATTACACCATCTTTTATTCCATAAGTGGGCCAGGCGTGGACAAAGAA CCCTTCAATTTGTTTTACATAGAGAAAGACACTGGGGATATCTTTTGTACAAGGAGCATT GACCGTGAGAAATACGAACAGTTTGCGTTATATGGCTATGCAACAACTGCAGATGGCTAT GCACCAGAATATCCACTCCCTTTGATCATCAAAATTGAAGATGATAATGATAACGCCCCA TATTTTGAACACAGAGTGACTATCTTTACTGTGCCTGAAAATTGCCGATCCGGAACTTCA GTGGGAAAAGTGACCGCCACAGACCTTGACGAACCTGACACTCTCCATACTCGTCTGAAA TATAAAATCTTACAACAAATCCCAGATCATCCAAAGCATTTCTCCATACACCCAGATACC GGTGTCATCACCACAACTACACCTTTTCTGGATAGAGAAAAATGTGATACTTACCAGTTA ATAATGGAAGTGCGAGACATGGGTGGTCAGCCTTTCGGTTTATTTAATACAGGAACAATT ACTATTTCACTTGAGGATGAAAATGACAATCCACCATCTTTCACAGAAACTTCTTATGTT ACAGAAGTAGAAGAAAACAGAATTGACGTGGAGATTTTGCGAATGAAGGTACAGGATCAG GATTTGCCAAACACTCCTCACTCAAAGGCTGTATACAAAATCTTACAAGGAAATGAAAAT GGAAACTTCATAATTAGCACAGATCCAAATACAAATGAAGGAGTGCTGTGTGTTGTCAAG CCATTGAACTATGAAGTCAATCGCCAAGTTATTTTGCAAGTTGGTGTCATTAACGAGGCA CAATTCTCTAAAGCAGCGAGCTCACAAACTCCTACAATGTGCACTACAACTGTCACCGTT AAAATTATAGACAGTGATGAGGGCCCTGAATGCCACCCTCCAGTGAAAGTTATTCAGAGT CAAGATGGCTTCCCAGCTGGCCAAGAACTCCTTGGATACAAAGCACTGGACCCGGAAATA TCCAGTGGTGAAGGCTTAAGGTATCAGAAGTTAGGGGATGAAGATAACTGGTTTGAAATT AATCAACACACTGGCGACTTGAGAACTCTAAAAGTACTAGATAGAGAATCCAAATTTGTA AAAAACAACCAATACAATATTTCAGTTGTTGCAGTGGATGCAGTTGGCCGATCTTGCACT GGAACATTAGTAGTTCATTTGGATGATTACAACGATCACGCACCTCAAATTGACAAAGAA GTGACCATTTGTCAGAATAATGAGGATTTTGCTGTTCTGAAACCTGTAGATCCAGATGGA CCTGAAAATGGACCACCTTTTCAATTCTTTCTGGATAATTCTGCCAGTAAAAACTGGAAC ATAGAAGAAAAGGATGGTAAAACTGCCATTCTTCGTCAACGGCAAAATCTTGATTATAAC TATTATTCTGTGCCTATTCAAATAAAAGACAGGCATGGTTTAGTTGCAACACATATGTTA ACAGTGAGAGTATGTGACTGTTCAACTCCATCTGAGTGTAGAATGAAGGATAAAAGTACA AGAGACGTTAGACCAAATGTAATACTTGGAAGATGGGCTATTCTTGCTATGGTGTTGGGT TCTGTATTGTTATTATGTATTCTGTTTACATGTTTCTGTGTCACTGCTAAGAGAACAGTC AAGAAATGTTTTCCAGAAGACATAGCCCAGCAAAATTTAATTGTATCAAATACTGAAGGA CCTGGAGAAGAAGTAACGGAAGCAAATATTAGACTCCCCATGCAGACATCCAACATTTGT GACACAAGCATGTCTGTTGGTACTGTTGGTGGCCAGGGAATCAAAACACAGCAAAGTTTT GAGATGGTCAAAGGAGGCTACACTTTGGATTCCAACAAAGGAGGTGGACATCAGACCTTG GAGTCCGTCAAGGGAGTGGGGCAGGGAGATACTGGCAGATATGCGTACACGGACTGGCAG AGTTTCACCCAACCTCGGCTTGGCGAAAAGGTGTATTTGTGTGGACAAGATGAGGAGCAT AAACATTGTGAAGACTACGTTTGTTCGTATAACTATGAAGGCAAAGGTTCTCTGGCCGGC TCAGTAGGTTGCTGCAGCGATCGGCAGGAAGAAGAGGGACTGGAGTTTCTAGATCACCTG GAACCCAAATTTAGGACATTAGCAAAGACATGCATCAAGAAA
Cloned ORF protein sequence for pF1KB7342 Download>KIBB7342 894 aa MALASAAPGSIFCKQLLFSLLVLTLLCDACQKVYLRVPSHLQAETLVGKVNLEECLKSAS LIRSSDPAFRILEDGSIYTTHDLILSSERKSFSIFLSDGQRREQQEIKVVLSARENKSPK KRHTKDTALKRSKRRWAPIPASLMENSLGPFPQHVQQIQSDAAQNYTIFYSISGPGVDKE PFNLFYIEKDTGDIFCTRSIDREKYEQFALYGYATTADGYAPEYPLPLIIKIEDDNDNAP YFEHRVTIFTVPENCRSGTSVGKVTATDLDEPDTLHTRLKYKILQQIPDHPKHFSIHPDT GVITTTTPFLDREKCDTYQLIMEVRDMGGQPFGLFNTGTITISLEDENDNPPSFTETSYV TEVEENRIDVEILRMKVQDQDLPNTPHSKAVYKILQGNENGNFIISTDPNTNEGVLCVVK PLNYEVNRQVILQVGVINEAQFSKAASSQTPTMCTTTVTVKIIDSDEGPECHPPVKVIQS QDGFPAGQELLGYKALDPEISSGEGLRYQKLGDEDNWFEINQHTGDLRTLKVLDRESKFV KNNQYNISVVAVDAVGRSCTGTLVVHLDDYNDHAPQIDKEVTICQNNEDFAVLKPVDPDG PENGPPFQFFLDNSASKNWNIEEKDGKTAILRQRQNLDYNYYSVPIQIKDRHGLVATHML TVRVCDCSTPSECRMKDKSTRDVRPNVILGRWAILAMVLGSVLLLCILFTCFCVTAKRTV KKCFPEDIAQQNLIVSNTEGPGEEVTEANIRLPMQTSNICDTSMSVGTVGGQGIKTQQSF EMVKGGYTLDSNKGGGHQTLESVKGVGQGDTGRYAYTDWQSFTQPRLGEKVYLCGQDEEH KHCEDYVCSYNYEGKGSLAGSVGCCSDRQEEEGLEFLDHLEPKFRTLAKTCIKK
Nucleotide Sequence (with vector) for pF1KB7342 Download>pF1KB7342 5795 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCTCTGGCC TCTGCTGCCCCAGGGAGCATCTTCTGTAAGCAGCTCCTTTTCTCTCTCCTGGTTTTAACA TTACTTTGCGATGCTTGTCAGAAAGTTTATCTTCGAGTTCCTTCTCATCTTCAGGCTGAA ACACTTGTAGGCAAAGTGAATCTGGAGGAGTGTCTCAAGTCGGCCAGCCTAATCCGGTCC AGTGACCCTGCCTTCAGAATTCTAGAAGATGGCTCAATTTACACAACACATGACCTCATT TTGTCTTCTGAAAGGAAAAGTTTTTCCATTTTCCTTTCAGATGGTCAGAGACGGGAACAA CAAGAGATAAAAGTTGTACTGTCAGCAAGAGAAAACAAGTCTCCTAAGAAGAGACATACC AAAGACACAGCCCTCAAGCGCAGCAAGAGACGATGGGCTCCTATTCCAGCTTCATTGATG GAGAACTCGTTGGGTCCATTTCCACAACACGTTCAGCAGATCCAATCTGATGCTGCACAG AATTACACCATCTTTTATTCCATAAGTGGGCCAGGCGTGGACAAAGAACCCTTCAATTTG TTTTACATAGAGAAAGACACTGGGGATATCTTTTGTACAAGGAGCATTGACCGTGAGAAA TACGAACAGTTTGCGTTATATGGCTATGCAACAACTGCAGATGGCTATGCACCAGAATAT CCACTCCCTTTGATCATCAAAATTGAAGATGATAATGATAACGCCCCATATTTTGAACAC AGAGTGACTATCTTTACTGTGCCTGAAAATTGCCGATCCGGAACTTCAGTGGGAAAAGTG ACCGCCACAGACCTTGACGAACCTGACACTCTCCATACTCGTCTGAAATATAAAATCTTA CAACAAATCCCAGATCATCCAAAGCATTTCTCCATACACCCAGATACCGGTGTCATCACC ACAACTACACCTTTTCTGGATAGAGAAAAATGTGATACTTACCAGTTAATAATGGAAGTG CGAGACATGGGTGGTCAGCCTTTCGGTTTATTTAATACAGGAACAATTACTATTTCACTT GAGGATGAAAATGACAATCCACCATCTTTCACAGAAACTTCTTATGTTACAGAAGTAGAA GAAAACAGAATTGACGTGGAGATTTTGCGAATGAAGGTACAGGATCAGGATTTGCCAAAC ACTCCTCACTCAAAGGCTGTATACAAAATCTTACAAGGAAATGAAAATGGAAACTTCATA ATTAGCACAGATCCAAATACAAATGAAGGAGTGCTGTGTGTTGTCAAGCCATTGAACTAT GAAGTCAATCGCCAAGTTATTTTGCAAGTTGGTGTCATTAACGAGGCACAATTCTCTAAA GCAGCGAGCTCACAAACTCCTACAATGTGCACTACAACTGTCACCGTTAAAATTATAGAC AGTGATGAGGGCCCTGAATGCCACCCTCCAGTGAAAGTTATTCAGAGTCAAGATGGCTTC CCAGCTGGCCAAGAACTCCTTGGATACAAAGCACTGGACCCGGAAATATCCAGTGGTGAA GGCTTAAGGTATCAGAAGTTAGGGGATGAAGATAACTGGTTTGAAATTAATCAACACACT GGCGACTTGAGAACTCTAAAAGTACTAGATAGAGAATCCAAATTTGTAAAAAACAACCAA TACAATATTTCAGTTGTTGCAGTGGATGCAGTTGGCCGATCTTGCACTGGAACATTAGTA GTTCATTTGGATGATTACAACGATCACGCACCTCAAATTGACAAAGAAGTGACCATTTGT CAGAATAATGAGGATTTTGCTGTTCTGAAACCTGTAGATCCAGATGGACCTGAAAATGGA CCACCTTTTCAATTCTTTCTGGATAATTCTGCCAGTAAAAACTGGAACATAGAAGAAAAG GATGGTAAAACTGCCATTCTTCGTCAACGGCAAAATCTTGATTATAACTATTATTCTGTG CCTATTCAAATAAAAGACAGGCATGGTTTAGTTGCAACACATATGTTAACAGTGAGAGTA TGTGACTGTTCAACTCCATCTGAGTGTAGAATGAAGGATAAAAGTACAAGAGACGTTAGA CCAAATGTAATACTTGGAAGATGGGCTATTCTTGCTATGGTGTTGGGTTCTGTATTGTTA TTATGTATTCTGTTTACATGTTTCTGTGTCACTGCTAAGAGAACAGTCAAGAAATGTTTT CCAGAAGACATAGCCCAGCAAAATTTAATTGTATCAAATACTGAAGGACCTGGAGAAGAA GTAACGGAAGCAAATATTAGACTCCCCATGCAGACATCCAACATTTGTGACACAAGCATG TCTGTTGGTACTGTTGGTGGCCAGGGAATCAAAACACAGCAAAGTTTTGAGATGGTCAAA GGAGGCTACACTTTGGATTCCAACAAAGGAGGTGGACATCAGACCTTGGAGTCCGTCAAG GGAGTGGGGCAGGGAGATACTGGCAGATATGCGTACACGGACTGGCAGAGTTTCACCCAA CCTCGGCTTGGCGAAAAGGTGTATTTGTGTGGACAAGATGAGGAGCATAAACATTGTGAA GACTACGTTTGTTCGTATAACTATGAAGGCAAAGGTTCTCTGGCCGGCTCAGTAGGTTGC TGCAGCGATCGGCAGGAAGAAGAGGGACTGGAGTTTCTAGATCACCTGGAACCCAAATTT AGGACATTAGCAAAGACATGCATCAAGAAAGTTTAAACGAATTCGAGCTCGGTACCCGGG GATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAA GGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTC TAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGT CCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCT CTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCA GCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCC TGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAG GTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGC AGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGAT GGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCA CAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCG GTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCG CGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACT GAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCT CACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACG CTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGC ACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTC GCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTC GTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGA TTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACC CGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGT ATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGA GCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTC AAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGC AAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAG GCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCC GACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGT TCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCT TTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGG CTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCT TGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGAT TAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGG CTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAA AAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGT TTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTC TACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATT ATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGG ATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGG GGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGC GCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATC GCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGT CTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGA GGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAA ACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGA AGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTG CCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTT GTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTG CGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAA TTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTA TTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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