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SpecieshumanProduct IDFXC23123Cloning SiteSgfI-PmeIGenBank AccessionGeneKIEE2672SymbolTRPV6
Alias : ABP/ZF, CAT1, CATL, ECAC2, HRPTTN, HSA277909, LP6728, ZFABDescriptiontransient receptor potential cation channel subfamily V member 6Original Clone IDcp01761
Length: 2295 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 765 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS5874.2 0 100.0 TRPV6 CCDS5875.1 3.2e-175 74.8 TRPV5 CCDS53829.1 1.8e-22 33.8 TRPV4 CCDS9134.1 1.9e-22 33.8 TRPV4 CCDS32576.1 8e-21 30.5 TRPV2
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR008345 42 64 PR01766 Transient receptor potential channel IPR008344 115 136 PR01765 Transient receptor potential channel NULL 119 134 PR01415 NULL IPR008344 137 152 PR01765 Transient receptor potential channel NULL 218 232 PR01415 NULL IPR008344 241 264 PR01765 Transient receptor potential channel IPR008344 327 347 PR01765 Transient receptor potential channel IPR008344 380 401 PR01765 Transient receptor potential channel IPR008344 459 485 PR01765 Transient receptor potential channel IPR008344 653 679 PR01765 Transient receptor potential channel IPR008345 691 708 PR01766 Transient receptor potential channel IPR008345 712 724 PR01766 Transient receptor potential channel IPR008345 730 746 PR01766 Transient receptor potential channel IPR008345 746 765 PR01766 Transient receptor potential channel HMMPfam IPR002110 157 186 PF00023 Ankyrin repeat IPR002110 203 233 PF00023 Ankyrin repeat IPR005821 450 618 PF00520 Ion transport HMMSmart IPR002110 84 114 SM00248 Ankyrin repeat IPR002110 118 147 SM00248 Ankyrin repeat IPR002110 156 185 SM00248 Ankyrin repeat IPR002110 202 231 SM00248 Ankyrin repeat IPR002110 279 308 SM00248 Ankyrin repeat HMMTigr IPR004729 52 745 TIGR00870 Transient receptor potential channel ProfileScan IPR020683 84 302 PS50297 Ankyrin repeat-containing domain IPR002110 156 188 PS50088 Ankyrin repeat IPR002110 202 234 PS50088 Ankyrin repeat
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 369 FCMLGAIYLLYIICFTMCCIYRP 391 PRIMARY 23 2 424 IRLVGELVTVIGAIIILLVEVPD 446 PRIMARY 23 3 473 AFMVLVTMVMRLISASGEVVPMS 495 PRIMARY 23 4 524 KMIFGDLMRFCWLMAVVILGFAS 546 PRIMARY 23 5 594 MYSITYAAFAIIATLLMLNLLIA 616 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_061116 765 606680 100.0 100.0 NP_062815 729 606679 74.8 94.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE2672 Download>KIEE2672 2295 bp ATGGGACCTCTACAGGGAGACGGTGGGCCGGCCCTTGGGGGGGCTGATGTGGCCCCAAGG CTGAGTCCCGTCAGGGTCTGGCCTCGGCCTCAGGCCCCCAAGGAGCCGGCCCTACACCCC ATGGGTTTGTCACTGCCCAAGGAGAAAGGGCTAATTCTCTGCCTATGGAGCAAGTTCTGC AGATGGTTCCAGAGACGGGAGTCCTGGGCCCAGAGCCGAGATGAGCAGAACCTGCTGCAG CAGAAGAGGATCTGGGAGTCTCCTCTCCTTCTAGCTGCCAAAGATAATGATGTCCAGGCC CTGAACAAGTTGCTCAAGTATGAGGATTGCAAGGTGCACCAGAGAGGAGCCATGGGGGAA ACAGCGCTACACATAGCAGCCCTCTATGACAACCTGGAGGCCGCCATGGTGCTGATGGAG GCTGCCCCGGAGCTGGTCTTTGAGCCCATGACATCTGAGCTCTATGAGGGTCAGACTGCA CTGCACATCGCTGTTGTGAACCAGAACATGAACCTGGTGCGAGCCCTGCTTGCCCGCAGG GCCAGTGTCTCTGCCAGAGCCACAGGCACTGCCTTCCGCCGTAGTCCCTGCAACCTCATC TACTTTGGGGAGCACCCTTTGTCCTTTGCTGCCTGTGTGAACAGTGAGGAGATCGTGCGG CTGCTCATTGAGCATGGAGCTGACATCCGGGCCCAGGACTCCCTGGGAAACACAGTGTTA CACATCCTCATCCTCCAGCCCAACAAAACCTTTGCCTGCCAGATGTACAACCTGTTGCTG TCCTACGACAGACATGGGGACCACCTGCAGCCCCTGGACCTCGTGCCCAATCACCAGGGT CTCACCCCTTTCAAGCTGGCTGGAGTGGAGGGTAACACTGTGATGTTTCAGCACCTGATG CAGAAGCGGAAGCACACCCAGTGGACGTATGGACCACTGACCTCGACTCTCTATGACCTC ACAGAGATCGACTCCTCAGGGGATGAGCAGTCCCTGCTGGAACTTATCATCACCACCAAG AAGCGGGAGGCTCGCCAGATCCTGGACCAGACGCCGGTGAAGGAGCTGGTGAGCCTCAAG TGGAAGCGGTACGGGCGGCCGTACTTCTGCATGCTGGGTGCCATATATCTGCTGTACATC ATCTGCTTCACCATGTGCTGCATCTACCGCCCCCTCAAGCCCAGGACCAATAACCGCACG AGCCCCCGGGACAACACCCTCTTACAGCAGAAGCTACTTCAGGAAGCCTACATGACCCCT AAGGACGATATCCGGCTGGTCGGGGAGCTGGTGACTGTCATTGGGGCTATCATCATCCTG CTGGTAGAGGTTCCAGACATCTTCAGAATGGGGGTCACTCGCTTCTTTGGACAGACCATC CTTGGGGGCCCATTCCATGTCCTCATCATCACCTATGCCTTCATGGTGCTGGTGACCATG GTGATGCGGCTCATCAGTGCCAGCGGGGAGGTGGTACCCATGTCCTTTGCACTCGTGCTG GGCTGGTGCAACGTCATGTACTTCGCCCGAGGATTCCAGATGCTAGGCCCCTTCACCATC ATGATTCAGAAGATGATTTTTGGCGACCTGATGCGATTCTGCTGGCTGATGGCTGTGGTC ATCCTGGGCTTTGCTTCAGCCTTCTATATCATCTTCCAGACAGAGGACCCCGAGGAGCTA GGCCACTTCTACGACTACCCCATGGCCCTGTTCAGCACCTTCGAGCTGTTCCTTACCATC ATCGATGGCCCAGCCAACTACAACGTGGACCTGCCCTTCATGTACAGCATCACCTATGCT GCCTTTGCCATCATCGCCACACTGCTCATGCTCAACCTCCTCATTGCCATGATGGGCGAC ACTCACTGGCGAGTGGCCCATGAGCGGGATGAGCTGTGGAGGGCCCAGATTGTGGCCACC ACGGTGATGCTGGAGCGGAAGCTGCCTCGCTGCCTGTGGCCTCGCTCCGGGATCTGCGGA CGGGAGTATGGCCTGGGAGACCGCTGGTTCCTGCGGGTGGAAGACAGGCAAGATCTCAAC CGGCAGCGGATCCAACGCTACGCACAGGCCTTCCACACCCGGGGCTCTGAGGATTTGGAC AAAGACTCAGTGGAAAAACTAGAGCTGGGCTGTCCCTTCAGCCCCCACCTGTCCCTTCCT ATGCCCTCAGTGTCTCGAAGTACCTCCCGCAGCAGTGCCAATTGGGAAAGGCTTCGGCAA GGGACCCTGAGGAGAGACCTGCGTGGGATAATCAACAGGGGTCTGGAGGACGGGGAGAGC TGGGAATATCAGATC
Cloned ORF protein sequence for pF1KE2672 Download>KIEE2672 765 aa MGPLQGDGGPALGGADVAPRLSPVRVWPRPQAPKEPALHPMGLSLPKEKGLILCLWSKFC RWFQRRESWAQSRDEQNLLQQKRIWESPLLLAAKDNDVQALNKLLKYEDCKVHQRGAMGE TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVVNQNMNLVRALLARR ASVSARATGTAFRRSPCNLIYFGEHPLSFAACVNSEEIVRLLIEHGADIRAQDSLGNTVL HILILQPNKTFACQMYNLLLSYDRHGDHLQPLDLVPNHQGLTPFKLAGVEGNTVMFQHLM QKRKHTQWTYGPLTSTLYDLTEIDSSGDEQSLLELIITTKKREARQILDQTPVKELVSLK WKRYGRPYFCMLGAIYLLYIICFTMCCIYRPLKPRTNNRTSPRDNTLLQQKLLQEAYMTP KDDIRLVGELVTVIGAIIILLVEVPDIFRMGVTRFFGQTILGGPFHVLIITYAFMVLVTM VMRLISASGEVVPMSFALVLGWCNVMYFARGFQMLGPFTIMIQKMIFGDLMRFCWLMAVV ILGFASAFYIIFQTEDPEELGHFYDYPMALFSTFELFLTIIDGPANYNVDLPFMYSITYA AFAIIATLLMLNLLIAMMGDTHWRVAHERDELWRAQIVATTVMLERKLPRCLWPRSGICG REYGLGDRWFLRVEDRQDLNRQRIQRYAQAFHTRGSEDLDKDSVEKLELGCPFSPHLSLP MPSVSRSTSRSSANWERLRQGTLRRDLRGIINRGLEDGESWEYQI
Nucleotide Sequence (with vector) for pF1KE2672 Download>pF1KE2672 5408 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGGACCTCTA CAGGGAGACGGTGGGCCGGCCCTTGGGGGGGCTGATGTGGCCCCAAGGCTGAGTCCCGTC AGGGTCTGGCCTCGGCCTCAGGCCCCCAAGGAGCCGGCCCTACACCCCATGGGTTTGTCA CTGCCCAAGGAGAAAGGGCTAATTCTCTGCCTATGGAGCAAGTTCTGCAGATGGTTCCAG AGACGGGAGTCCTGGGCCCAGAGCCGAGATGAGCAGAACCTGCTGCAGCAGAAGAGGATC TGGGAGTCTCCTCTCCTTCTAGCTGCCAAAGATAATGATGTCCAGGCCCTGAACAAGTTG CTCAAGTATGAGGATTGCAAGGTGCACCAGAGAGGAGCCATGGGGGAAACAGCGCTACAC ATAGCAGCCCTCTATGACAACCTGGAGGCCGCCATGGTGCTGATGGAGGCTGCCCCGGAG CTGGTCTTTGAGCCCATGACATCTGAGCTCTATGAGGGTCAGACTGCACTGCACATCGCT GTTGTGAACCAGAACATGAACCTGGTGCGAGCCCTGCTTGCCCGCAGGGCCAGTGTCTCT GCCAGAGCCACAGGCACTGCCTTCCGCCGTAGTCCCTGCAACCTCATCTACTTTGGGGAG CACCCTTTGTCCTTTGCTGCCTGTGTGAACAGTGAGGAGATCGTGCGGCTGCTCATTGAG CATGGAGCTGACATCCGGGCCCAGGACTCCCTGGGAAACACAGTGTTACACATCCTCATC CTCCAGCCCAACAAAACCTTTGCCTGCCAGATGTACAACCTGTTGCTGTCCTACGACAGA CATGGGGACCACCTGCAGCCCCTGGACCTCGTGCCCAATCACCAGGGTCTCACCCCTTTC AAGCTGGCTGGAGTGGAGGGTAACACTGTGATGTTTCAGCACCTGATGCAGAAGCGGAAG CACACCCAGTGGACGTATGGACCACTGACCTCGACTCTCTATGACCTCACAGAGATCGAC TCCTCAGGGGATGAGCAGTCCCTGCTGGAACTTATCATCACCACCAAGAAGCGGGAGGCT CGCCAGATCCTGGACCAGACGCCGGTGAAGGAGCTGGTGAGCCTCAAGTGGAAGCGGTAC GGGCGGCCGTACTTCTGCATGCTGGGTGCCATATATCTGCTGTACATCATCTGCTTCACC ATGTGCTGCATCTACCGCCCCCTCAAGCCCAGGACCAATAACCGCACGAGCCCCCGGGAC AACACCCTCTTACAGCAGAAGCTACTTCAGGAAGCCTACATGACCCCTAAGGACGATATC CGGCTGGTCGGGGAGCTGGTGACTGTCATTGGGGCTATCATCATCCTGCTGGTAGAGGTT CCAGACATCTTCAGAATGGGGGTCACTCGCTTCTTTGGACAGACCATCCTTGGGGGCCCA TTCCATGTCCTCATCATCACCTATGCCTTCATGGTGCTGGTGACCATGGTGATGCGGCTC ATCAGTGCCAGCGGGGAGGTGGTACCCATGTCCTTTGCACTCGTGCTGGGCTGGTGCAAC GTCATGTACTTCGCCCGAGGATTCCAGATGCTAGGCCCCTTCACCATCATGATTCAGAAG ATGATTTTTGGCGACCTGATGCGATTCTGCTGGCTGATGGCTGTGGTCATCCTGGGCTTT GCTTCAGCCTTCTATATCATCTTCCAGACAGAGGACCCCGAGGAGCTAGGCCACTTCTAC GACTACCCCATGGCCCTGTTCAGCACCTTCGAGCTGTTCCTTACCATCATCGATGGCCCA GCCAACTACAACGTGGACCTGCCCTTCATGTACAGCATCACCTATGCTGCCTTTGCCATC ATCGCCACACTGCTCATGCTCAACCTCCTCATTGCCATGATGGGCGACACTCACTGGCGA GTGGCCCATGAGCGGGATGAGCTGTGGAGGGCCCAGATTGTGGCCACCACGGTGATGCTG GAGCGGAAGCTGCCTCGCTGCCTGTGGCCTCGCTCCGGGATCTGCGGACGGGAGTATGGC CTGGGAGACCGCTGGTTCCTGCGGGTGGAAGACAGGCAAGATCTCAACCGGCAGCGGATC CAACGCTACGCACAGGCCTTCCACACCCGGGGCTCTGAGGATTTGGACAAAGACTCAGTG GAAAAACTAGAGCTGGGCTGTCCCTTCAGCCCCCACCTGTCCCTTCCTATGCCCTCAGTG TCTCGAAGTACCTCCCGCAGCAGTGCCAATTGGGAAAGGCTTCGGCAAGGGACCCTGAGG AGAGACCTGCGTGGGATAATCAACAGGGGTCTGGAGGACGGGGAGAGCTGGGAATATCAG ATCGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCAT GCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGC TGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCT GAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCG CCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCA GATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTA CGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCA AAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGG ATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACA GGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCT TGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCC GCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCC GGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGC GTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTG GGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCC ATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGAC CACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGAT CAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTC AAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCG AATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTG GCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGC GAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATC GCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCG ACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGA ATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCG TAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAA AAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTT TCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCT GTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCT CAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCC CGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTT ATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGC TACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTAT CTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAA ACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAA AAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGA AAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCT TTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACC ATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTG CATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTT TGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTA CAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACC GCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACA GATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGC GGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTC AGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTA GGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGG CAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATG GCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTAT CCGCTCAT
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