TRIM49 ORF clone pFN21AB0984

KOP
KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AB0984

How to Order Order Information

Clone info.

Species

human

Clone Name

pFN21AB0984 Sequence (with vector) Restriction Map

Product ID

FHC24409

ORF Sequence

DNA sequence (1356 bp)
Protein sequence (452 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIBB0984

Symbol

TRIM49

Alias : RNF18, TRIM49A, TRIM49L2

Description

tripartite motif containing 49

Original Clone ID

cs02084

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1356 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 452 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS8287.1 9e-151 100.0 TRIM49 CCDS53694.1 3.9e-150 99.3 TRIM49C CCDS55762.1 2.2e-142 95.1 TRIM49B CCDS60930.1 2.5e-126 84.5 TRIM49D1 CCDS2015.1 8.7e-72 51.9 TRIM43 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR003879 285 302 PR01407 Butyrophylin-like IPR003879 323 347 PR01407 Butyrophylin-like IPR003879 353 366 PR01407 Butyrophylin-like IPR003879 400 424 PR01407 Butyrophylin-like IPR003879 431 449 PR01407 Butyrophylin-like HMMPfam IPR000315 88 129 PF00643 Zinc finger IPR003877 338 449 PF00622 SPla/RYanodine receptor SPRY HMMSmart IPR001841 15 55 SM00184 Zinc finger IPR000315 88 129 SM00336 Zinc finger IPR018355 338 452 SM00449 SPla/RYanodine receptor subgroup ProfileScan IPR001841 15 56 PS50089 Zinc finger IPR000315 88 129 PS50119 Zinc finger IPR001870 269 452 PS50188 B302/SPRY domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_065091 452 606124 100.0 100.0 XP_016873516 375 606124 83.0 100.0 NP_003132 475 109092 34.0 97.8 NP_660215 468 607868 34.2 97.1 XP_016857901 467 607868 34.2 97.1 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB0984 Download

>KIBB0984  1356 bp
ATGAATTCTGGAATCTTACAGGTCTTTCAGGGGGAACTCATCTGCCCCCTGTGCATGAAC
TACTTCATAGACCCGGTCACCATAGACTGTGGGCACAGCTTTTGCAGGCCTTGTTTCTAC
CTCAACTGGCAAGACATCCCATTTCTTGTCCAGTGCTCTGAATGCACAAAGTCAACCGAG
CAGATAAACCTCAAAACCAACATTCATTTGAAGAAGATGGCTTCTCTTGCCAGAAAAGTC
AGTCTCTGGCTATTCCTGAGCTCTGAGGAGCAAATGTGTGGCACTCACAGGGAGACAAAG
AAGATATTCTGTGAAGTGGACAGGAGCCTGCTCTGTTTGCTGTGCTCCAGCTCTCAGGAG
CACCGGTATCACAGACACCGTCCCATTGAGTGGGCTGCTGAGGAACACCGGGAGAAGCTT
TTACAGAAAATGCAGTCTTTGTGGGAAAAAGCTTGTGAAAATCACAGAAACCTGAATGTG
GAAACCACCAGAACCAGATGCTGGAAGGATTATGTGAATTTAAGGCTAGAAGCAATTAGA
GCTGAGTATCAGAAGATGCCTGCATTTCATCATGAAGAAGAAAAACATAATTTGGAGATG
CTGAAAAAGAAGGGGAAAGAAATTTTTCATCGACTTCATTTAAGTAAAGCCAAAATGGCT
CATAGGATGGAGATTTTAAGAGGAATGTATGAGGAGCTGAACGAAATGTGCCATAAACCA
GATGTGGAGCTACTTCAGGCTTTTGGAGACATATTACACAGGAGTGAGTCCGTGCTGCTG
CACATGCCCCAGCCTCTGAATCCAGAGCTCAGTGCAGGGCCCATCACTGGACTGAGGGAC
AGGCTCAACCAATTCCGAGTGCATATTACTCTGCATCATGAAGAAGCCAACAATGATATC
TTTCTGTATGAAATTTTGAGAAGCATGTGTATTGGATGTGACCATCAAGATGTACCCTAT
TTCACTGCAACACCTAGAAGTTTTCTTGCATGGGGTGTTCAGACTTTCACCTCGGGCAAA
TATTACTGGGAGGTCCATGTAGGGGACTCCTGGAATTGGGCTTTTGGTGTCTGTAATATG
TATCGGAAAGAGAAGAATCAGAATGAGAAGATAGATGGAAAGGCGGGACTCTTTCTTCTT
GGGTGTGTTAAGAATGACATTCAATGCAGTCTCTTTACCACCTCCCCACTTATGCTGCAA
TATATCCCAAAACCTACCAGCCGAGTAGGATTATTCCTGGATTGTGAGGCTAAGACTGTG
AGCTTTGTTGATGTTAATCAAAGCTCCCTAATATACACCATCCCTAATTGCTCTTTCTCA
CCTCCTCTCAGGCCTATCTTTTGCTGTATTCACTTC

ORF Protein

Cloned ORF protein sequence for pFN21AB0984 Download

>KIBB0984  452 aa
MNSGILQVFQGELICPLCMNYFIDPVTIDCGHSFCRPCFYLNWQDIPFLVQCSECTKSTE
QINLKTNIHLKKMASLARKVSLWLFLSSEEQMCGTHRETKKIFCEVDRSLLCLLCSSSQE
HRYHRHRPIEWAAEEHREKLLQKMQSLWEKACENHRNLNVETTRTRCWKDYVNLRLEAIR
AEYQKMPAFHHEEEKHNLEMLKKKGKEIFHRLHLSKAKMAHRMEILRGMYEELNEMCHKP
DVELLQAFGDILHRSESVLLHMPQPLNPELSAGPITGLRDRLNQFRVHITLHHEEANNDI
FLYEILRSMCIGCDHQDVPYFTATPRSFLAWGVQTFTSGKYYWEVHVGDSWNWAFGVCNM
YRKEKNQNEKIDGKAGLFLLGCVKNDIQCSLFTTSPLMLQYIPKPTSRVGLFLDCEAKTV
SFVDVNQSSLIYTIPNCSFSPPLRPIFCCIHF

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB0984 Download

>pFN21AB0984  6061 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGAATTCTGGAATCTTACAGGTCTTTCAGGGGGA
ACTCATCTGCCCCCTGTGCATGAACTACTTCATAGACCCGGTCACCATAGACTGTGGGCA
CAGCTTTTGCAGGCCTTGTTTCTACCTCAACTGGCAAGACATCCCATTTCTTGTCCAGTG
CTCTGAATGCACAAAGTCAACCGAGCAGATAAACCTCAAAACCAACATTCATTTGAAGAA
GATGGCTTCTCTTGCCAGAAAAGTCAGTCTCTGGCTATTCCTGAGCTCTGAGGAGCAAAT
GTGTGGCACTCACAGGGAGACAAAGAAGATATTCTGTGAAGTGGACAGGAGCCTGCTCTG
TTTGCTGTGCTCCAGCTCTCAGGAGCACCGGTATCACAGACACCGTCCCATTGAGTGGGC
TGCTGAGGAACACCGGGAGAAGCTTTTACAGAAAATGCAGTCTTTGTGGGAAAAAGCTTG
TGAAAATCACAGAAACCTGAATGTGGAAACCACCAGAACCAGATGCTGGAAGGATTATGT
GAATTTAAGGCTAGAAGCAATTAGAGCTGAGTATCAGAAGATGCCTGCATTTCATCATGA
AGAAGAAAAACATAATTTGGAGATGCTGAAAAAGAAGGGGAAAGAAATTTTTCATCGACT
TCATTTAAGTAAAGCCAAAATGGCTCATAGGATGGAGATTTTAAGAGGAATGTATGAGGA
GCTGAACGAAATGTGCCATAAACCAGATGTGGAGCTACTTCAGGCTTTTGGAGACATATT
ACACAGGAGTGAGTCCGTGCTGCTGCACATGCCCCAGCCTCTGAATCCAGAGCTCAGTGC
AGGGCCCATCACTGGACTGAGGGACAGGCTCAACCAATTCCGAGTGCATATTACTCTGCA
TCATGAAGAAGCCAACAATGATATCTTTCTGTATGAAATTTTGAGAAGCATGTGTATTGG
ATGTGACCATCAAGATGTACCCTATTTCACTGCAACACCTAGAAGTTTTCTTGCATGGGG
TGTTCAGACTTTCACCTCGGGCAAATATTACTGGGAGGTCCATGTAGGGGACTCCTGGAA
TTGGGCTTTTGGTGTCTGTAATATGTATCGGAAAGAGAAGAATCAGAATGAGAAGATAGA
TGGAAAGGCGGGACTCTTTCTTCTTGGGTGTGTTAAGAATGACATTCAATGCAGTCTCTT
TACCACCTCCCCACTTATGCTGCAATATATCCCAAAACCTACCAGCCGAGTAGGATTATT
CCTGGATTGTGAGGCTAAGACTGTGAGCTTTGTTGATGTTAATCAAAGCTCCCTAATATA
CACCATCCCTAATTGCTCTTTCTCACCTCCTCTCAGGCCTATCTTTTGCTGTATTCACTT
CGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGC
AAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTG
AGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATT
GATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATT
TGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAAC
AATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAG
TAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTT
TCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGA
CTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGC
GGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAA
TAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTC
CGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAA
ACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAA
CTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATG
ATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAA
GAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTC
ACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACC
ATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTA
ACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAG
CTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACA
ACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATA
GACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGC
TGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCA
CTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCA
ACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGG
TAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAA
TACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGC
AAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCC
CTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTAT
AAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGC
CGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCT
CACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACG
AACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACC
CGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGA
GGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAA
GGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTA
GCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGC
AGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTG
ACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGA
TCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCG
CTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGC
CTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGC
AGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGC
GTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTA
GCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATC
T