PTBP3 ORF clone pFN21AE5675

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AE5675

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Clone info.

Species

human

Clone Name

pFN21AE5675 Sequence (with vector) Restriction Map

Product ID

FHC14093

ORF Sequence

DNA sequence (1674 bp)
Protein sequence (558 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE5675

Symbol

PTBP3

Alias : ROD1

Description

polypyrimidine tract binding protein 3, transcript variant 6

Original Clone ID

oc95675

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1674 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 558 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS59141.1 2.6e-163 100.0 PTBP3 CCDS6784.1 2e-157 99.8 PTBP3 CCDS55333.1 1.1e-156 99.3 PTBP3 CCDS55332.1 1.8e-151 99.4 PTBP3 CCDS59140.1 3.6e-132 100.0 PTBP3 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR000504 190 254 PF00076 RNA recognition motif domain IPR000504 366 432 PF00076 RNA recognition motif domain IPR000504 485 545 PF00076 RNA recognition motif domain HMMSmart IPR000504 66 135 SM00360 RNA recognition motif domain IPR000504 189 258 SM00360 RNA recognition motif domain IPR000504 365 434 SM00360 RNA recognition motif domain IPR000504 482 552 SM00360 RNA recognition motif domain HMMTigr IPR006536 63 558 TIGR01649 HnRNP-L/PTB/hephaestus splicing factor ProfileScan IPR000504 65 149 PS50102 RNA recognition motif domain IPR000504 188 264 PS50102 RNA recognition motif domain IPR000504 364 438 PS50102 RNA recognition motif domain IPR000504 481 556 PS50102 RNA recognition motif domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001231827 558 607527 100.0 100.0 XP_011517567 561 607527 99.5 100.0 NP_005147 552 607527 99.8 96.6 NP_001157262 555 607527 99.3 96.6 XP_006717409 521 607527 100.0 93.4 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE5675 Download

>KIEE5675  1674 bp
ATGGACGCTTCCCCCTCACCTTTCTCTCTCCCCAAGAAACTTAATGAATTATCTGCCCGT
CGGGGATCTGATGAGCTTCTTTCTTCTGGCATCATTAACGGACCTTTTACCATGAATAGT
TCTACTCCTTCTACAGCTAATGGGAATGACAGCAAGAAATTTAAACGAGATAGACCTCCC
TGTTCGCCTTCCCGTGTTCTCCATCTTCGAAAAATTCCATGTGATGTCACCGAAGCAGAG
ATCATATCATTAGGTCTACCATTTGGCAAAGTAACTAATCTTTTGATGTTGAAAGGAAAA
AGCCAGGCTTTCTTAGAAATGGCTTCTGAGGAAGCTGCCGTTACTATGGTGAATTATTAC
ACTCCTATTACTCCTCACCTTCGAAGCCAGCCTGTTTATATTCAGTATTCCAATCACAGA
GAACTTAAGACTGACAATCTACCTAATCAAGCTCGAGCCCAAGCTGCACTGCAGGCTGTC
AGTGCCGTCCAATCAGGAAGCCTGGCCCTTTCTGGAGGTCCTTCCAATGAAGGCACAGTC
CTACCTGGGCAGAGCCCTGTGCTTCGAATAATTATTGAAAACCTCTTTTACCCTGTTACC
CTGGAAGTTCTTCATCAGATATTTTCTAAATTTGGCACAGTCTTGAAGATTATCACCTTT
ACAAAGAATAATCAGTTTCAAGCCTTGCTTCAGTATGCTGACCCAGTAAATGCACATTAT
GCCAAAATGGCTCTGGATGGCCAGAATATCTATAATGCATGCTGCACTCTGCGCATTGAC
TTCTCCAAGCTCACCAGCCTTAATGTGAAATATAATAATGACAAAAGCAGAGACTTCACT
CGCTTAGACCTTCCTACTGGTGATGGCCAGCCATCCCTTGAACCCCCTATGGCTGCTGCT
TTTGGTGCACCGGGTATAATTTCTTCACCATATGCAGGGGCTGCTGGATTTGCCCCAGCC
ATTGGATTTCCTCAAGCTACAGGTCTATCAGTTCCAGCTGTTCCTGGAGCTCTTGGTCCT
CTCACAATCACCTCTTCTGCTGTCACTGGAAGGATGGCCATTCCTGGGGCTAGTGGTATA
CCAGGAAATTCTGTTCTACTCGTCACAAATCTCAATCCTGATCTTATCACACCACATGGG
CTTTTTATCCTATTTGGAGTCTATGGTGATGTACATCGAGTGAAGATTATGTTTAATAAG
AAAGAAAATGCCTTGGTTCAGATGGCGGATGCAAATCAAGCTCAGCTAGCAATGAACCAT
CTAAGTGGTCAGAGACTTTATGGGAAAGTGCTTCGTGCTACACTGTCCAAACATCAAGCA
GTACAGCTTCCTCGAGAGGGACAAGAAGACCAAGGTCTGACTAAGGATTTCAGCAATAGT
CCTTTGCATCGCTTTAAAAAGCCGGGCTCTAAAAACTTCCAGAATATCTTTCCACCATCA
GCCACTCTGCATCTTTCCAACATTCCCCCTTCTGTTACAGTGGATGATCTGAAGAACCTT
TTCATAGAAGCTGGATGTTCAGTGAAGGCTTTTAAATTCTTTCAGAAAGATCGCAAAATG
GCGCTCATTCAATTGGGATCTGTGGAAGAAGCAATTCAGGCCCTCATTGAGCTTCATAAC
CATGACCTTGGAGAAAATCACCACCTCAGAGTTTCCTTCTCAAAATCTACAATC

ORF Protein

Cloned ORF protein sequence for pFN21AE5675 Download

>KIEE5675  558 aa
MDASPSPFSLPKKLNELSARRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRDRPP
CSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY
TPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTV
LPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHY
AKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAA
FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI
PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH
LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPS
ATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHN
HDLGENHHLRVSFSKSTI

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE5675 Download

>pFN21AE5675  6379 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGACGCTTCCCCCTCACCTTTCTCTCTCCCCAA
GAAACTTAATGAATTATCTGCCCGTCGGGGATCTGATGAGCTTCTTTCTTCTGGCATCAT
TAACGGACCTTTTACCATGAATAGTTCTACTCCTTCTACAGCTAATGGGAATGACAGCAA
GAAATTTAAACGAGATAGACCTCCCTGTTCGCCTTCCCGTGTTCTCCATCTTCGAAAAAT
TCCATGTGATGTCACCGAAGCAGAGATCATATCATTAGGTCTACCATTTGGCAAAGTAAC
TAATCTTTTGATGTTGAAAGGAAAAAGCCAGGCTTTCTTAGAAATGGCTTCTGAGGAAGC
TGCCGTTACTATGGTGAATTATTACACTCCTATTACTCCTCACCTTCGAAGCCAGCCTGT
TTATATTCAGTATTCCAATCACAGAGAACTTAAGACTGACAATCTACCTAATCAAGCTCG
AGCCCAAGCTGCACTGCAGGCTGTCAGTGCCGTCCAATCAGGAAGCCTGGCCCTTTCTGG
AGGTCCTTCCAATGAAGGCACAGTCCTACCTGGGCAGAGCCCTGTGCTTCGAATAATTAT
TGAAAACCTCTTTTACCCTGTTACCCTGGAAGTTCTTCATCAGATATTTTCTAAATTTGG
CACAGTCTTGAAGATTATCACCTTTACAAAGAATAATCAGTTTCAAGCCTTGCTTCAGTA
TGCTGACCCAGTAAATGCACATTATGCCAAAATGGCTCTGGATGGCCAGAATATCTATAA
TGCATGCTGCACTCTGCGCATTGACTTCTCCAAGCTCACCAGCCTTAATGTGAAATATAA
TAATGACAAAAGCAGAGACTTCACTCGCTTAGACCTTCCTACTGGTGATGGCCAGCCATC
CCTTGAACCCCCTATGGCTGCTGCTTTTGGTGCACCGGGTATAATTTCTTCACCATATGC
AGGGGCTGCTGGATTTGCCCCAGCCATTGGATTTCCTCAAGCTACAGGTCTATCAGTTCC
AGCTGTTCCTGGAGCTCTTGGTCCTCTCACAATCACCTCTTCTGCTGTCACTGGAAGGAT
GGCCATTCCTGGGGCTAGTGGTATACCAGGAAATTCTGTTCTACTCGTCACAAATCTCAA
TCCTGATCTTATCACACCACATGGGCTTTTTATCCTATTTGGAGTCTATGGTGATGTACA
TCGAGTGAAGATTATGTTTAATAAGAAAGAAAATGCCTTGGTTCAGATGGCGGATGCAAA
TCAAGCTCAGCTAGCAATGAACCATCTAAGTGGTCAGAGACTTTATGGGAAAGTGCTTCG
TGCTACACTGTCCAAACATCAAGCAGTACAGCTTCCTCGAGAGGGACAAGAAGACCAAGG
TCTGACTAAGGATTTCAGCAATAGTCCTTTGCATCGCTTTAAAAAGCCGGGCTCTAAAAA
CTTCCAGAATATCTTTCCACCATCAGCCACTCTGCATCTTTCCAACATTCCCCCTTCTGT
TACAGTGGATGATCTGAAGAACCTTTTCATAGAAGCTGGATGTTCAGTGAAGGCTTTTAA
ATTCTTTCAGAAAGATCGCAAAATGGCGCTCATTCAATTGGGATCTGTGGAAGAAGCAAT
TCAGGCCCTCATTGAGCTTCATAACCATGACCTTGGAGAAAATCACCACCTCAGAGTTTC
CTTCTCAAAATCTACAATCGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGA
GTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGT
TGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCA
GACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAA
TGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAAT
AAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGG
GAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATC
CTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGT
CAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACT
TTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATG
TATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGT
ATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCT
GTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCA
CGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCC
GAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCC
CGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTG
GTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTA
TGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATC
GGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTT
GATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATG
CCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCT
TCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGC
TCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCT
CGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTAC
ACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCC
TCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAG
CTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACA
TGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTT
TCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGC
GAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCT
CTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCG
TGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCA
AGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACT
ATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTA
ACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTA
ACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCT
TCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTT
TTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGA
TCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCA
TGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGC
ACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATT
AAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTT
ATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGC
CGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCAC
TTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCG
GCGTAGAGGATCGAGATCT