hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080305/iprscan-20080305-06155166/chunk_1/iprscan-20080305-06155166.nocrc
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Query sequence: pF1KSDA0186
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03651.5.ls Partner of SLD five, PSF1                      500.4     2e-147   1
PF03651.5.fs Partner of SLD five, PSF1                      498.5   7.1e-147   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03651.5.fs   1/1       1   194 [.     1   204 []   498.5 7.1e-147
PF03651.5.ls   1/1       1   194 [.     1   204 []   500.4   2e-147

Alignments of top-scoring domains:
PF03651.5.fs: domain 1 of 1, from 1 to 194: score 498.5, E = 7.1e-147
                   *->lvlekalelvlelkrnpdvnLPaYnedliRqvlkevseLykknealv
                      +++eka+el++el+r+p+++LPa+ned++Rqvl+e+++Ly++n+++v
  pF1KSDA018     1    MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDV 47   

                   ekakaGlldDkvaklqyrlaaLcmErnrRCllAYlreRkdrirSlrWeyg
                   ++ak+G+++D+++++++r+++L+  rnrRC++AYl++R++rir+lrWeyg
  pF1KSDA018    48 NEAKSGGRSDLIPTIKFRHCSLL--RNRRCTVAYLYDRLLRIRALRWEYG 95   

                   GvDLpsSirfsqqDTNNLsdeEieyfneYkdlLadykssLGGdLegidLs
                   +v Lp+++rf+      +++eE+e+fn+Yk++La+y++sLGGd eg+d++
  pF1KSDA018    96 SV-LPNALRFH------MAAEEMEWFNNYKRSLATYMRSLGGD-EGLDIT 137  

                   ldlvPPkslFidVRvLkDyGEfetedGtsvnLkKdSqhflprsdcErLIr
                   +d++PPksl+i+VR+LkDyGEfe++dGtsv+LkK+Sqhflpr++cE+LIr
  pF1KSDA018   138 QDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRWKCEQLIR 187  

                   QGvLeki<-*
                   QGvLe+i   
  pF1KSDA018   188 QGVLEHI    194  

PF03651.5.ls: domain 1 of 1, from 1 to 194: score 500.4, E = 2e-147
                   *->lvlekalelvlelkrnpdvnLPaYnedliRqvlkevseLykknealv
                      +++eka+el++el+r+p+++LPa+ned++Rqvl+e+++Ly++n+++v
  pF1KSDA018     1    MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDV 47   

                   ekakaGlldDkvaklqyrlaaLcmErnrRCllAYlreRkdrirSlrWeyg
                   ++ak+G+++D+++++++r+++L+  rnrRC++AYl++R++rir+lrWeyg
  pF1KSDA018    48 NEAKSGGRSDLIPTIKFRHCSLL--RNRRCTVAYLYDRLLRIRALRWEYG 95   

                   GvDLpsSirfsqqDTNNLsdeEieyfneYkdlLadykssLGGdLegidLs
                   +v Lp+++rf+      +++eE+e+fn+Yk++La+y++sLGGd eg+d++
  pF1KSDA018    96 SV-LPNALRFH------MAAEEMEWFNNYKRSLATYMRSLGGD-EGLDIT 137  

                   ldlvPPkslFidVRvLkDyGEfetedGtsvnLkKdSqhflprsdcErLIr
                   +d++PPksl+i+VR+LkDyGEfe++dGtsv+LkK+Sqhflpr++cE+LIr
  pF1KSDA018   138 QDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRWKCEQLIR 187  

                   QGvLeki<-*
                   QGvLe+i   
  pF1KSDA018   188 QGVLEHI    194  

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