hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080306/iprscan-20080306-21102684/chunk_1/iprscan-20080306-21102684.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: pF1KB9511
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00561.10.fs alpha/beta hydrolase fold                  40.9    2.8e-11   2
PF00561.10.ls alpha/beta hydrolase fold                  24.0    9.9e-05   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00561.10.fs   1/2     105   167 ..     1    66 [.    27.3  1.9e-07
PF00561.10.ls   1/1     105   365 ..     1   236 []    24.0  9.9e-05

Alignments of top-scoring domains:
PF00561.10.fs: domain 1 of 2, from 105 to 167: score 27.3, E = 1.9e-07
                   *->fdvialDlrGfGqSsrpkrgapdladyrfddlaedlealld.algld
                      ++++alDlr +G+++++       +d +++++a+d+  +++   g+ 
   pF1KB9511   105    CRIVALDLRSHGETKVK-----NPEDLSAETMAKDVGNVVEaMYGDL 146  

                   kp.vnlvGhSmGGlialayaa<-*
                    p++ l+GhSmGG+ia + a+   
   pF1KB9511   147 PPpIMLIGHSMGGAIAVHTAS    167  

PF00561.10.ls: domain 1 of 1, from 105 to 365: score 24.0, E = 9.9e-05
                   *->fdvialDlrGfGqSsrpkrgapdladyrfddlaedlealld.algld
                      ++++alDlr +G+++++       +d +++++a+d+  +++   g+ 
   pF1KB9511   105    CRIVALDLRSHGETKVK-----NPEDLSAETMAKDVGNVVEaMYGDL 146  

                   kp.vnlvGhSmGGlialayaakypelrvkalvlvgtvhpallsaalvprl
                    p++ l+GhSmGG+ia + a+    +   +l  ++ v  ++++a   ++ 
   pF1KB9511   147 PPpIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDVVEGTAMDALNSMQ- 195  

                   gnleglllanffnrlldsveallgrapkq.....................
                    n++  + + f       +++ ++ + +q ++ ++ + +  ++ ++ ++ 
   pF1KB9511   196 -NFLRGRPKTFKS---LENAIEWSVKSGQirnlesarvsmvgqvkqcegi 241  

                   ........................fellgrpfvsdflkqfeqwlsslirf
                   ++++++++  ++  ++++++++++    +r    d+++ ++  + +++r 
   pF1KB9511   242 tspegsksivegiieeeeedeegsESISKRKKEDDMETKKD--HPYTWR- 288  

                   getdggdgllgpaaalgkllqgdls.alkdidvPtliiwgtdDplvppda
                      + + +  +     ++ +  +ls+      +P l++ ++ D+l +  +
   pF1KB9511   289 --IELAKTEKY-----WDGWFRGLSnLFLSCPIPKLLLLAGVDRLDKDLT 331  

                   seklaalipnaelvviddagHlagqlekpeevaeli.k<-*
                   + +   ++++ +  v++ +gH + ++++p+ vae++     
   pF1KB9511   332 IGQ---MQGKFQMQVLPQCGHAV-HEDAPDKVAEAVaT    365  

//