hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /data/Pfam.bin
Sequence file: /tmp/20080306/iprscan-20080306-21100359/chunk_1/iprscan-20080306-21100359.nocrc
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Query sequence: pF1KB7374
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00102.17.fs Protein-tyrosine phosphatase 16.3 0.00031 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00102.17.fs 1/1 183 197 .. 1 15 [. 16.3 0.00031
Alignments of top-scoring domains:
PF00102.17.fs: domain 1 of 1, from 183 to 197: score 16.3, E = 0.00031
*->NkeKNRykdilpyDh<-*
N+eKNRy+dilp+ h
pF1KB7374 183 NREKNRYRDILPFQH 197
//