hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080305/iprscan-20080305-22452892/chunk_1/iprscan-20080305-22452892.nocrc
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Query sequence: pF1KB8723
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             23.1    0.00091   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   2/4     350   372 ..     1    24 []     9.6      4.1
PF00560.23.ls   4/4     407   430 ..     1    24 []     9.2      5.1

Alignments of top-scoring domains:
PF00560.23.ls: domain 2 of 4, from 350 to 372: score 9.6, E = 4.1
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L +L+Lsg    lt ++++++l+ l   
   pF1KB8723   350    QLSVLSLSG-V-MLT-DVSPEpLqAL    372  

PF00560.23.ls: domain 4 of 4, from 407 to 430: score 9.2, E = 5.1
                   *->nLeeLdLsgCNpsltgs..lpssl.nl<-*
                      +L++L+++g N s++  ++l+s l++l   
   pF1KB8723   407    QLTTLSFYG-N-SIS-IsaLQSLLqHL    430  

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