hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20091008/iprscan-20091008-22463920/chunk_1/iprscan-20091008-22463920.nocrc
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Query sequence: pF1KB5714
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01839.13.fs FG-GAP repeat                                   44.1    5.6e-12   2
PF01839.13.ls FG-GAP repeat                                   47.7    3.7e-11   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01839.13.fs   1/2     162   191 ..     1    36 []    22.8  9.1e-06
PF01839.13.ls   1/2     162   191 ..     1    36 []    24.6  0.00032
PF01839.13.fs   2/2     243   272 ..     1    36 []    21.3  2.6e-05
PF01839.13.ls   2/2     243   272 ..     1    36 []    23.1  0.00095

Alignments of top-scoring domains:
PF01839.13.fs: domain 1 of 2, from 162 to 191: score 22.8, E = 9.1e-06
                   *->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
                      ++ s+a+ D++GDG+ +l+v       g++d  ++++   
   pF1KB5714   162    NVNSLALCDFDGDGKKELLV-------GSeDFDIRVF    191  

PF01839.13.ls: domain 1 of 2, from 162 to 191: score 24.6, E = 0.00032
                   *->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
                      ++ s+a+ D++GDG+ +l+v       g++d  ++++   
   pF1KB5714   162    NVNSLALCDFDGDGKKELLV-------GSeDFDIRVF    191  

PF01839.13.fs: domain 2 of 2, from 243 to 272: score 21.3, E = 2.6e-05
                   *->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
                      +++s++a Dln DG ++l++       g+++g+v +    
   pF1KB5714   243    HAMSIHAFDLNSDGVNELIT-------GWsNGKVDAR    272  

PF01839.13.ls: domain 2 of 2, from 243 to 272: score 23.1, E = 0.00095
                   *->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
                      +++s++a Dln DG ++l++       g+++g+v +    
   pF1KB5714   243    HAMSIHAFDLNSDGVNELIT-------GWsNGKVDAR    272  

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