hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20100303/iprscan-20100303-00151834/chunk_1/iprscan-20100303-00151834.nocrc
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Query sequence: pF1KB8635
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00646.23.fs F-box domain                                    26.0    6.7e-06   1
PF00646.23.ls F-box domain                                    28.0      3e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00646.23.fs   1/1       1    48 [.     1    46 []    26.0  6.7e-06
PF00646.23.ls   1/1       1    48 [.     1    46 []    28.0    3e-05

Alignments of top-scoring domains:
PF00646.23.fs: domain 1 of 1, from 1 to 48: score 26.0, E = 6.7e-06
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                      +++ +L  e+ll+ +s+Ld  ++ +l++++ ++++++ ++ lw    
   pF1KB8635     1    MHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPaLWSlLH 47   

                   l<-*
                       
   pF1KB8635    48 F    48   

PF00646.23.ls: domain 1 of 1, from 1 to 48: score 28.0, E = 3e-05
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                      +++ +L  e+ll+ +s+Ld  ++ +l++++ ++++++ ++ lw    
   pF1KB8635     1    MHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPaLWSlLH 47   

                   l<-*
                       
   pF1KB8635    48 F    48   

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