hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20090425/iprscan-20090425-23081706/chunk_1/iprscan-20090425-23081706.nocrc
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Query sequence: pF1KE0076
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02178.9.ls AT hook motif                                   15.6      0.043   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02178.9.ls   1/1     544   556 ..     1    13 []    15.6    0.043

Alignments of top-scoring domains:
PF02178.9.ls: domain 1 of 1, from 544 to 556: score 15.6, E = 0.043
                   *->kRkRGRPrKaata<-*
                      kRkRGRP+K+      
   pF1KE0076   544    KRKRGRPPKNLLL    556  

//