hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20090425/iprscan-20090425-18251289/chunk_1/iprscan-20090425-18251289.nocrc
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Query sequence: pF1KE0567
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF01500.7.ls Keratin, high sulfur B2 protein               -6.8    1.7e-06   1
PF01500.7.fs Keratin, high sulfur B2 protein               22.2    3.1e-06   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF01500.7.ls   1/1     114   252 ..     1   183 []    -6.8  1.7e-06

Alignments of top-scoring domains:
PF01500.7.ls: domain 1 of 1, from 114 to 252: score -6.8, E = 1.7e-06
                   *->qtScCGFptCStlgTCGsscCqpsCcqtsCCqPsCcqssCCQPvccq
                         cCG ++C++ +     +Cqp Cc +s+Cq sC  + CC+ vcc 
   pF1KE0567   114    ---CCGASSCCQQS-----SCQPACCASSSCQQSCRVPVCCKAVCCV 152  

                   ttccr....tcfqsccvpvtcqssCCqPtCcqtSCCqPtCcQpssCqtgC
                    tc+ +++++c+qs c+p +c ss Cq +Cc++ CC+P+Cc + +C + C
   pF1KE0567   153 PTCSEssssCCQQSSCQPACCTSSPCQQSCCVSVCCKPVCCKSICCVPVC 202  

                   GIGggiGyGQeGsSGAvSsRvrWCRPdCrvegtClPpCCvvsCtpPTCCq
                                SGA S         C+  ++C+P CC +sC++P    
   pF1KE0567   203 -------------SGASS--------PCCQQSSCQPACCTSSCCRP---- 227  

                   pvsaQasCCRPsCqPYCgqsCCrPaCsGPvcCrttccePc<-*
                    +s  +  CRP         C+rPa      C +++       
   pF1KE0567   228 -SSSVSLLCRPV--------CSRPAS-----C-SFSSGQK    252  

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