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Gene/Protein Characteristic Table for KIAA1854

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Product ID	ORK06894
Accession No	AB058757
Description	SLIT and NTRK-like family, member 2
Clone name	fg02232
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5954 bp) Predicted protein sequence (572 aa)
Source	Human fetal brain

Length: 5954 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis). Integrity of 3' end

Length: 572 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001611	189	202	PR00019	Leucine-rich repeat
	IPR001611	428	441	PR00019	Leucine-rich repeat
HMMPfam	IPR001611	93	115	PF00560	Leucine-rich repeat
	IPR001611	117	139	PF00560	Leucine-rich repeat
	IPR001611	141	163	PF00560	Leucine-rich repeat
	IPR001611	165	187	PF00560	Leucine-rich repeat
	IPR001611	188	208	PF00560	Leucine-rich repeat
	IPR000372	345	378	PF01462	Leucine-rich repeat
	IPR001611	406	428	PF00560	Leucine-rich repeat
	IPR001611	430	452	PF00560	Leucine-rich repeat
	IPR001611	454	476	PF00560	Leucine-rich repeat
	IPR001611	478	500	PF00560	Leucine-rich repeat
	IPR001611	501	523	PF00560	Leucine-rich repeat
HMMSmart	IPR000372	34	70	SM00013	Leucine-rich repeat
	IPR003591	95	114	SM00369	Leucine-rich repeat
	IPR003591	115	138	SM00369	Leucine-rich repeat
	IPR003591	139	162	SM00369	Leucine-rich repeat
	IPR003591	163	186	SM00369	Leucine-rich repeat
	IPR003591	187	210	SM00369	Leucine-rich repeat
	IPR000483	222	270	SM00082	Cysteine-rich flanking region
	IPR000372	345	382	SM00013	Leucine-rich repeat
	IPR003591	404	427	SM00369	Leucine-rich repeat
	IPR003591	428	451	SM00369	Leucine-rich repeat
	IPR003591	452	475	SM00369	Leucine-rich repeat
	IPR003591	476	499	SM00369	Leucine-rich repeat
	IPR003591	500	523	SM00369	Leucine-rich repeat
	IPR000483	535	572	SM00082	Cysteine-rich flanking region

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	4	CLKMLSGVWFLSVLTVAGILQTE	26	PRIMARY	23

RT-PCR-ELISA

Experimental conditions

Chromosome No. X
Experimental conditions

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