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Gene/Protein Characteristic Table for FLJ00112

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Product ID	ORK05081
Accession No	AK024503
Clone name	as00112
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4575 bp) Predicted protein sequence (1192 aa)
Source	Human spleen

Length: 4575 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1192 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR000538	835	931	PD000918	Link
HMMPfam	IPR006209	158	194	PF00008	EGF-like domain
	IPR000782	249	367	PF02469	Beta-Ig-H3/fasciclin
	IPR000782	393	524	PF02469	Beta-Ig-H3/fasciclin
	IPR006209	692	721	PF00008	EGF-like domain
	IPR006209	727	762	PF00008	EGF-like domain
	IPR006209	768	805	PF00008	EGF-like domain
	IPR000538	838	931	PF00193	Link
HMMSmart	IPR006210	35	69	SM00181	Type I EGF
	IPR006210	76	111	SM00181	Type I EGF
	IPR006210	115	153	SM00181	Type I EGF
	IPR006210	157	195	SM00181	Type I EGF
	IPR006210	199	237	SM00181	Type I EGF
	IPR006210	599	639	SM00181	Type I EGF
	IPR006210	649	683	SM00181	Type I EGF
	IPR006210	691	722	SM00181	Type I EGF
	IPR006210	726	763	SM00181	Type I EGF
	IPR006210	767	806	SM00181	Type I EGF
	IPR000538	837	932	SM00445	Link
ProfileScan	NULL	13	225	PS50311	NULL
	IPR000782	237	365	PS50213	Beta-Ig-H3/fasciclin
	IPR000782	381	522	PS50213	Beta-Ig-H3/fasciclin
	NULL	578	794	PS50311	NULL
	IPR000782	952	1087	PS50213	Beta-Ig-H3/fasciclin
ScanRegExp	IPR006209	13	24	PS00022	EGF-like domain
	IPR006209	13	27	PS01186	EGF-like domain
	IPR002049	13	47	PS01248	Laminin-type EGF-like domain
	IPR006209	57	68	PS00022	EGF-like domain
	IPR006209	57	68	PS01186	EGF-like domain
	IPR006209	97	110	PS01186	EGF-like domain
	IPR006209	139	152	PS01186	EGF-like domain
	IPR006209	627	638	PS00022	EGF-like domain
	IPR006209	627	641	PS01186	EGF-like domain
	IPR002049	627	661	PS01248	Laminin-type EGF-like domain
	IPR006209	671	682	PS00022	EGF-like domain
	IPR006209	671	682	PS01186	EGF-like domain
	IPR006209	749	762	PS01186	EGF-like domain
	IPR006209	938	951	PS01186	EGF-like domain

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1102	GAGIFFAIILVTGAVALAAYSY	1123	PRIMARY	22

RT-PCR-ELISA

Experimental conditions

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