FLJ00114

Product ID	ORK05548
Accession No	AK074047
Clone name	as00114
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4382 bp) Predicted protein sequence (348 aa)
Source	Human spleen
Rouge ID	mFLJ00114 by Kazusa Mouse cDNA Project

	N-terminal truncation	Coding interruption
cloned DNA seq	Warning	Warning

Length: 348 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAB84873	3.1e-151	100.0	FLJ00114 protei...	Homo sapiens
EAW52141	8.2e-141	95.9	integrin, alpha...	Homo sapiens
AAA59180	1.2e-140	95.9	eukocyte adhesi...	Homo sapiens
P20702	1.2e-140	95.9	Integrin alpha-...	Homo sapiens
XP_510951	7.1e-140	95.4	integrin alpha ...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000413	314	328	PF00357	Integrins alpha chain
ScanRegExp	IPR000413	313	320	PS00242	Integrins alpha chain

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	292	PLIVGSSIGGLLLLALITAVLYK	314	PRIMARY	23

Primer_f
Primer_r
PCR conditions	test