• Link
  Rouge GTOP UniProt GeneCards RefDIC
• Features
  DNA sequence Protein sequence Expression Mapping
• HUGE
  Top page Gene List

Gene/Protein Characteristic Table for KIAA0267

Order Kazusa clone(s) from : Japan || Other countries

Product ID	ORK00043
Accession No	D87743
Description	solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6, transcript variant 2
Clone name	ha07045
Vector information	The cDNA fragment was inserted at the EcoRV-NotI site of the ... The cDNA fragment was inserted at the EcoRV-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the EcoRV (blunt-end ligation) site without using any linker or adapter. The 3' end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4408 bp) Predicted protein sequence (666 aa)
HaloTag ORF Clone	FHC00043
Flexi ORF Clone	FXC00043
Source	Myeloblast cell line (KG-1)
Rouge ID	mKIAA0267 by Kazusa Mouse cDNA Project

Length: 4408 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis). Integrity of 3' end

Length: 666 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002090	3	21	PR01088	Na+/H+ exchanger
	IPR002090	22	40	PR01088	Na+/H+ exchanger
	IPR002090	41	60	PR01088	Na+/H+ exchanger
	IPR002090	61	85	PR01088	Na+/H+ exchanger
	IPR002090	86	104	PR01088	Na+/H+ exchanger
	IPR002090	105	131	PR01088	Na+/H+ exchanger
	IPR002090	133	146	PR01088	Na+/H+ exchanger
	IPR004709	147	158	PR01084	Sodium/hydrogen exchanger subfamily
	IPR004709	161	175	PR01084	Sodium/hydrogen exchanger subfamily
	IPR004709	176	184	PR01084	Sodium/hydrogen exchanger subfamily
	IPR004709	221	231	PR01084	Sodium/hydrogen exchanger subfamily
	IPR002090	264	281	PR01088	Na+/H+ exchanger
	IPR002090	283	302	PR01088	Na+/H+ exchanger
	IPR002090	494	520	PR01088	Na+/H+ exchanger
	IPR002090	521	539	PR01088	Na+/H+ exchanger
	IPR002090	545	573	PR01088	Na+/H+ exchanger
	IPR002090	574	601	PR01088	Na+/H+ exchanger
	IPR002090	606	627	PR01088	Na+/H+ exchanger
HMMPfam	IPR006153	75	500	PF00999	Sodium/hydrogen exchanger
HMMTigr	IPR004709	61	652	TIGR00840	Sodium/hydrogen exchanger subfamily

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	21	LMRPLWLLLAVGVFDWAGASD	41	PRIMARY	21
	2	70	NLLIFILLLTLTILTIWLFK	89	PRIMARY	20
	3	97	HETGLAMIYGLLVGLVLRYGIHV	119	PRIMARY	23
	4	139	LLVTFDPEVFFNILLPPIIFYAG	161	SECONDARY	23
	5	176	ILAYAFLGTAISCFVIGSIMYGC	198	PRIMARY	23
	6	216	DCLLFGAIVSATDPVTVLAIFHE	238	SECONDARY	23
	7	247	ALLFGESVLNDAVAIVLSSSIVA	269	SECONDARY	23
	8	288	SIGIFLGIFSGSFAMGAATGVVT	310	SECONDARY	23
	9	331	FLMSWSTFLLAEAWGFTGVVAVL	353	PRIMARY	23
	10	412	VGAFVAIFLGRAANIYPLSLLLN	434	SECONDARY	23
	11	480	LLIVFFTVWVFGGGTTAMLSCLH	502	PRIMARY	23

Northern blot

Experimental conditions

Chromosome No. X
Experimental conditions

Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp