Gene/Protein Characteristic Table for KIAA1180
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Product ID ORK01154
Accession No AB033006
Description NDRG family member 4, transcript variant 6
Clone name hf00665as1
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (2994 bp)
Predicted protein sequence (360 aa)
Flexi ORF Clone FXC01154
Source Human adult brain
Rouge ID mKIAA1180 by Kazusa Mouse cDNA Project
Note We replaced hf00665a, former representative clones for KIAA1180 with hf00665as1. (2002/5/10)
Features of the cloned cDNA sequence
Description

Length: 2994 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1843 bp
Genome contig ID gi51511732f_56991562
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
AACTGTGCTGAAAAACTAATAAAGAACCTAAGAAG
Flanking genome sequence
(113258 - 113307)
----+----*----+----*----+----*----+----*----+----*
AATTCCAGTGTGGTGATGCCATGCCCATCATGGGAGGCTTTTGGAGAAAC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 16 f 57091562 57104818 15 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 360 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9ULP0 1.5e-148 100.0 Protein NDRG4; ...
Homo sapiens
Q8BTG7 7.5e-146 97.7 Protein NDRG4; ...
Mus musculus
EDL87274 6.3e-145 97.2 N-myc downstrea...
Rattus norvegicus
Q9Z2L9 1.2e-144 96.9 Protein NDRG4; ...
Rattus norvegicus
AAO65544 2.5e-140 96.3 brain and heart...
Rattus norvegicus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB033074 6e-79 62.0 KIAA1248
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR004142 16 298 PF03096 Ndr

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 120 GVGAGAYVLAKFALIFPDLVEGL 142 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GGACGCATCACTAAGGAAGAG
Primer_r AAGCATACAACGCAGTCCTGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 16
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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