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Gene/Protein Characteristic Table for KIAA0405

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Product ID	ORK00067
Accession No	AB007865
Description	fibronectin leucine rich transmembrane protein 2
Clone name	hg01274
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (7527 bp) Predicted protein sequence (706 aa)
HaloTag ORF Clone	FHC00067
Flexi ORF Clone	FXC00067
Source	Human adult brain
Rouge ID	mKIAA0405 by Kazusa Mouse cDNA Project

Length: 7527 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 706 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001611	207	220	PR00019	Leucine-rich repeat
	IPR001611	321	334	PR00019	Leucine-rich repeat
HMMPfam	IPR000372	81	108	PF01462	Leucine-rich repeat
	IPR001611	110	133	PF00560	Leucine-rich repeat
	IPR001611	156	178	PF00560	Leucine-rich repeat
	IPR001611	180	204	PF00560	Leucine-rich repeat
	IPR001611	206	224	PF00560	Leucine-rich repeat
	IPR001611	227	249	PF00560	Leucine-rich repeat
	IPR001611	251	275	PF00560	Leucine-rich repeat
	IPR001611	277	298	PF00560	Leucine-rich repeat
	IPR001611	299	321	PF00560	Leucine-rich repeat
	IPR001611	323	345	PF00560	Leucine-rich repeat
	IPR000483	382	407	PF01463	Cysteine-rich flanking region
	IPR003961	466	548	PF00041	Fibronectin
HMMSmart	IPR000372	81	113	SM00013	Leucine-rich repeat
	IPR003591	153	177	SM00369	Leucine-rich repeat
	IPR003591	178	203	SM00369	Leucine-rich repeat
	IPR003591	205	227	SM00369	Leucine-rich repeat
	IPR003591	228	248	SM00369	Leucine-rich repeat
	IPR003591	249	274	SM00369	Leucine-rich repeat
	IPR003591	298	320	SM00369	Leucine-rich repeat
	IPR003591	321	344	SM00369	Leucine-rich repeat
	IPR000483	356	407	SM00082	Cysteine-rich flanking region
ProfileScan	IPR003961	466	556	PS50853	Fibronectin
ScanRegExp	IPR013090	85	95	PS00119	Phospholipase A2

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	20	SHFDFAVYFFFSFSFSHHIVFYF	42	SECONDARY	23
	2	479	NDTSIQVSWLSLFTVMAYKLTWV	501	SECONDARY	23
	3	586	PFLLAGLIGGAVIFVLVVLLSVF	608	PRIMARY	23

RT-PCR

Experimental conditions

Chromosome No. 14
Experimental conditions

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