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Gene/Protein Characteristic Table for KIAA0588

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Product ID	ORK00569
Accession No	AB011160
Description	protocadherin gamma subfamily A, 12, transcript variant 1
Clone name	hj02685
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4747 bp) Predicted protein sequence (938 aa)
HaloTag ORF Clone	FHC00569
Flexi ORF Clone	FXC00569
Source	Human adult brain

Length: 4747 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 938 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002126	79	98	PR00205	Cadherin
	IPR002126	248	277	PR00205	Cadherin
	IPR002126	320	332	PR00205	Cadherin
	IPR002126	332	351	PR00205	Cadherin
	IPR002126	456	469	PR00205	Cadherin
	IPR002126	516	542	PR00205	Cadherin
	IPR002126	550	567	PR00205	Cadherin
HMMPfam	IPR013164	35	118	PF08266	Cadherin
	IPR002126	144	239	PF00028	Cadherin
	IPR002126	253	344	PF00028	Cadherin
	IPR002126	358	449	PF00028	Cadherin
	IPR002126	463	559	PF00028	Cadherin
	IPR002126	588	671	PF00028	Cadherin
HMMSmart	IPR002126	51	137	SM00112	Cadherin
	IPR002126	161	246	SM00112	Cadherin
	IPR002126	270	351	SM00112	Cadherin
	IPR002126	375	456	SM00112	Cadherin
	IPR002126	480	566	SM00112	Cadherin
	IPR002126	597	675	SM00112	Cadherin
ProfileScan	IPR002126	81	139	PS50268	Cadherin
	IPR002126	140	248	PS50268	Cadherin
	IPR002126	249	353	PS50268	Cadherin
	IPR002126	354	458	PS50268	Cadherin
	IPR002126	459	568	PS50268	Cadherin
	IPR002126	585	689	PS50268	Cadherin
ScanRegExp	IPR002126	127	137	PS00232	Cadherin
	IPR002126	236	246	PS00232	Cadherin
	IPR002126	341	351	PS00232	Cadherin
	IPR002126	446	456	PS00232	Cadherin
	IPR002126	556	566	PS00232	Cadherin

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	13	HRDYKGLVLLGILLGTLWETGCT	35	SECONDARY	23
	2	697	LYLVVAVAAVSCVFLAFVILLLA	719	PRIMARY	23

RT-PCR

Experimental conditions

Chromosome No. 5
Experimental conditions

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