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Gene/Protein Characteristic Table for FLJ00286

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Product ID	ORK06181
Accession No	AK131085
Clone name	sh02369
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5381 bp) Predicted protein sequence (576 aa)
Source	Human spleen

Length: 5381 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 576 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001024	48	168	PF01477	Lipoxygenase
	IPR009443	347	576	PF06409	Nuclear pore complex interacting
HMMSmart	IPR001024	51	165	SM00308	Lipoxygenase
ProfileScan	IPR001024	68	153	PS50095	Lipoxygenase

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	210	RIQRATCCVLLICLFLGANAVWY	232	PRIMARY	23
	2	255	TVAVGLVSSVVVYPVYLAILFLF	277	PRIMARY	23

Experimental conditions

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